Detailed information on CNT30117885


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6I544|GL52_ORYSJ, E-value = 2e-62

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690449Oryza nivaraOryza sativa51.4810095.34451forward
CNT30552278Oryza nivaraOryza glaberrima32.3132.0998.94283forward
CNT30246414Oryza nivaraAvena sativa24.221.1484.91212forward
CNT30661706Oryza nivaraTriticum dicoccoides26.3735.6584.42231forward
CNT30347816Oryza nivaraEragrostis tef51.8321.5782.6454forward
CNT30369486Oryza nivaraOryza glumipatula32.3131.9899.29283forward
CNT3099918Oryza nivaraOryza rufipogon30.8242.3999.26270forward
CNT30574799Oryza nivaraOryza barthii32.3164.6199.29283forward

Expression of CNT30117885

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MIVLIINKSSSFSPATYYKKLLYYYYILHVALTQISVIKMALYHRQVHIVNHQITDKSIQILR*

>peptide 2 (40 aa)
MYTSPYNLISSRPWRGRRRAPPARRRRAWRRWTACRGAGC*

>peptide 3 (59 aa)
MDCVPGSWLLKAETTAAGLSPVFLWKWTRPRGKTKTSPWEMVRERSLLAVVTKPTSSSP*

Sequence

>CNT30117885
ATATGGTTCACAGATAGAATCTTCCTCATCTTCCAGCCAAAATGATTGTACTAATCATTAACAAATCATCATCGTTCTCCCCAGCAACTTATTACAAGAA
ACTTCTCTATTACTACTACATTTTGCATGTCGCTCTTACACAAATAAGTGTCATCAAGATGGCATTATATCATCGACAAGTACATATAGTTAATCATCAA
ATCACAGACAAATCAATTCAAATTTTAAGATAAGTTTGAAACCTCAAATCTCTCCAATGTATACGTCGCCTTATAATCTTATATCGTCTAGGCCTTGGCG
AGGACGGCGTCGGGCACCGCCGGCGAGGCGGCGAAGAGCGTGGCGGCGATGGACTGCGTGCCGGGGAGCTGGCTGTTGAAGGCGGAGACGACGGCGGCGG
GCTTGTCGCCGGTGTTCCTCTGGAAGTGGACGAGGCCGCGGGGGAAGACGAAGACGTCGCCCTGGGAGATGGTGCGGGAGAGGAGCTTGTTGGCGGTGGT
GACGAAGCCGACGTCGAGCTCGCCGTAGAGGACGAAGACGACCTCGGTGGCGCGCGGGTGGGTGTGCGGCGGGTTGAGGGAGACGCCCAGGGTGTTGAGG
CCCGGGACCTTCTCGACGTTGGCGCCGGTGACCACGGCGCCGGTGGTGGTGTTGGCGGCGGCGCCGGGGCTGGCGAGCACGCCGGAGAAGAAGTCGTCCG
CCGTCGCGTTCGCCTTGCACGGGAACCCGTTCACCTTCACCTCTGAGCAGAGAGGACCACGACGACCCTGCAGCCCCAGCCATCCTGCTCGCTGATCTCT
CTCGCCTGCTAGCTGAGCCTCTGCTCTTCTTCTGCTCGCCGATGGTTAATTGATTGATGTGTGTTGACCACTTGTC