Detailed information on CNT30117869


BLAST search results

BLAST vs Swiss-Prot:
sp|Q53M52|TBA2_ORYSJ, E-value = 6e-114

BLAST vs NONCODE:
NONGMAT000219, E-value = 2e-49

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692533Oryza nivaraOryza sativa59.2650.4392.33352forward
CNT30555417Oryza nivaraOryza glaberrima100.3473.8598.15596forward
CNT30371316Oryza nivaraOryza glumipatula97.4749.0799.65579forward
CNT30104158Oryza nivaraOryza rufipogon10051.52100594forward
CNT30578286Oryza nivaraOryza barthii75.2546.5697.54447forward

Expression of CNT30117869

Peptides detected in this lncRNA

>peptide 1 (73 aa)
MPHLNPVGHQSTNWMVRFVLMVATAAFTSLGTTSPRYIRQHAMYLPWRGSHLAIMEDGSKALLVISATESCSW*

>peptide 2 (36 aa)
MSMRENTSTTLVELEIMHTALCTLARSPPGTTLGGW*

Sequence

>CNT30117869
ACAGATCATAGGATAGCAGCAGTAATCAAGCATTGCCAAGGCACCAGGCAAGAACCCTGAACCTCTCTAGTACTCGTCACCCTCATCACCCTCGTCACCA
TCGTCGAACTTGATGTCGATGCGGGAGAACACCTCGACGACGCTGGTGGAGTTGGAGATCATGCACACGGCCCTCTGCACCTTGGCCAGGTCTCCCCCCG
GGACGACGCTGGGCGGCTGGTAGTTGATGCCGCACTTGAACCCCGTGGGGCACCAGTCCACGAACTGGATGGTGCGCTTCGTCTTGATGGTGGCCACCGC
GGCGTTCACGTCCTTGGGGACCACGTCGCCGCGGTACATCAGGCAGCACGCCATGTACTTGCCGTGGCGCGGGTCGCACTTGGCCATCATGGAGGACGGC
TCGAAGGCGCTGTTGGTGATCTCCGCCACGGAGAGCTGCTCGTGGTAGGCCTTCTCGGCCGAGATCACCGGGGCGTAGGAGGAAAGCATGAAGTGGATCC
TCGGGTAGGGCACCAGGTTGGTCTGGAACTCGTTGACATCCACATTCAGAGCACCATCGAACCTCAGGGAGGCAGTCAGTGAGGAGATGACCTG