Detailed information on CNT30117767


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30577807Oryza nivaraOryza barthii61.5976.65100279reverse complement

Expression of CNT30117767

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MDSWITSSFITLHCITASTQLLLLFTSLDYSSNPSG*

>peptide 2 (39 aa)
MVVAGLSMDGFMDYIIIHHTALHYGLNSTAAVIYKSRLL*

>peptide 3 (32 aa)
MDVVRVARERGGVHGAGHLDQVLGGVHRHILHP

Sequence

>CNT30117767
GTGGTGATGATTAGTAGCTAGAACAAAAAATTTCATCATCAAGATGGTGGTGGCTGGCTTGTCCATGGATGGATTCATGGATTACATCATCATTCATCAC
ACTGCATTGCATTACGGCCTCAACTCAACTGCTGCTGTTATTTACAAGTCTAGATTACTCTAGTAATCCCTCGGGTTGATGCATGGAGATGACTAAGCTA
AGCTAGCTAATGACGACGGCGACGAACTGAACCGCTAAAAACCATGCCGTGGTTTTGATACAGCGGGTGGGGGAGCGGAGGCGGCGGCGGCGGCGGAGGA
GCTCACATGACGGAGCAGGCGTTGGGGTTCTCGTCGCTGAACATCTGGGGGGCATGGACGTTGTACGGGTAGCCCGGGAGCGCGGCGGCGTCCATGGTGC
CGGTCACCTTGACCAGGTCCTTGGCGGCGTCCACCGCCACATCCTTCACCCCT