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Detailed information on CNT30117727


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004391, E-value = 1e-134

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30370347Oryza nivaraOryza glumipatula63.6177.3883.98568forward
CNT30101375Oryza nivaraOryza rufipogon75.779.3495.27676forward
CNT30576967Oryza nivaraOryza barthii62.9341.7587.54562forward

Expression of CNT30117727

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MSTCWKAYEVYFHIVLVPRQNFYRAAENLQNKPHISSSPNLIWVLGLVIVSWA*

>peptide 2 (44 aa)
MIKEVDWGPYQDLLQVYFYPTTSLLVHRRQEIKFYTFWIWIQAS*

>peptide 3 (54 aa)
CKPRSQVNTAYIHISVSVLHIYSKVMCDRAAFAPAPTERKMEQQASNTCLIAIR*

>peptide 4 (33 aa)
MKSTFISFWFHVKISTELPRICKTSHTSHLVRI*

Sequence

>CNT30117727
TGTAAACCAAGAAGCCAAGTGAACACTGCATACATACATATTAGTGTTAGCGTGTTACATATATATAGCAAAGTGATGTGTGATAGAGCTGCATTTGCAC
CTGCACCTACAGAGAGGAAGATGGAGCAGCAAGCTAGCAATACGTGCTTGATCGCTATACGCTAGCTTCTTGCACACAATGTTGTTCCTGGTCCCTTCCT
GATCCCTAGTTGGTGGTCGAAACTGGTACATAACAACCGTCAATAGCAGGGGGCAGGGTCAGAGTGGCGGCAACACAATGAGTTTTGTGTGTGTTCGTTT
GCAGAGGTACTTGCTTGGACGAAGGAAAAGAGGGCGAGCATAACAAATGCATACATGATCAAAGAGGTTGATTGGGGACCATACCAAGACCTTCTCCAAG
TATACTTCTACCCCACGACATCACTTTTGGTCCATAGAAGACAAGAGATAAAGTTTTACACGTTTTGGATTTGGATTCAGGCCTCCTGACAACATCAACT
TCAAACTTCGGGGCTCTTGACCTAGCCACTGATCTAGAAGGAATTACGGGGGTCTATGAGTACTTGTTGGAAAGCTTATGAAGTCTACTTTCATATCGTT
TTGGTTCCACGTCAAAATTTCTACCGAGCTGCCGAGAATCTGCAAAACAAGCCACACATCTCATCTAGTCCGAATCTGATTTGGGTTTTGGGCCTTGTAA
TTGTGTCGTGGGCTTAGCCCAGGGGGTATGCACCCTAGGGAAACCTTAGGACGTCCCTAATCATACTTAATCAGTAGCCGTCATTGTTTAGAGTCGGGTT
TTGCTTAGATTATTCTGTCAAGAATAGTTTCGCCGCTAGATCGGTTTGTAGAACCCCAAATTCGAGTGCTTAATCATTCATATGAAATTGTGT