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Detailed information on CNT30117627


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522452Oryza nivaraSetaria italica47.3446.1481.99311forward
CNT30179972Oryza nivaraSecale cereale31.228.0182.93205forward
CNT30309159Oryza nivaraTriticum aestivum20.8523.9985.4137forward
CNT30220948Oryza nivaraHordeum vulgare20.8516.1483.94137forward
CNT30555184Oryza nivaraOryza glaberrima56.6257.6793.28372forward
CNT30435859Oryza nivaraAegilops tauschii20.415.1884.33134forward
CNT30659258Oryza nivaraTriticum dicoccoides2165.0985.51138forward
CNT30132649Oryza nivaraLolium perenne27.0911.881.46178forward
CNT30103605Oryza nivaraOryza rufipogon101.5298.6797.15667forward
CNT30577957Oryza nivaraOryza barthii53.5860.1795.17352forward
CNT30551656Oryza nivaraOryza brachyantha57.8444.5591.05380forward

Expression of CNT30117627

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MAPGRGMARWWRCGAERCNRSCGGRRRGGR*

>peptide 2 (35 aa)
MFGMIKHANVHQLQIIFISSSPEGLGLGGTGFLWK*

>peptide 3 (40 aa)
MQSELWRSASRGTLKAPVPSSFPAALLSYSPLVFLHLIATW

>peptide 4 (52 aa)
MWSRNGCSGSGFGLGGSGFGSGLGGTGFLLKWSMIFFLMGPQMVADAHNADG*

>peptide 5 (68 aa)
MLTSINCRSYSSVLRRRAWAWAARASCGSDRRSASPSCGCGRGMGAPAQASAWVAPASALAWVALASC*

Sequence

>CNT30117627
TGGCTAAATGTAAATAAATTATTTTACCATATATAATTTCATTTGGGAGAGAAAAATATGCAAATAGTACAAACATCCCTGCTGATGCCCGATAATCAAG
TAGAAATTACACTCCTGTGCTGAGCAGGATCATCATGTTCGGCATGATCAAACATGCTAACGTCCATCAATTGCAGATCATATTCATCAGTTCTTCGCCG
GAGGGCTTGGGCTTGGGCGGCACGGGCTTCTTGTGGAAGTGATCGAAGAAGTGCTTCTCCTTCTTGTGGATGTGGTCGAGGAATGGGTGCTCCGGCTCAG
GCTTCGGCTTGGGTGGCTCCGGCTTCGGCTCTGGCTTGGGTGGCACTGGCTTCTTGTTGAAATGGTCTATGATCTTCTTTTTAATGGGACCGCAGATGGT
CGCCGATGCGCACAACGCTGATGGGTAGTGGGTCTTGCCGGCGACGGCGATGAAGGTGCCCTCCGACATTGGCACGATCTTGGATGGCTCCTGGCCGGGG
CATGGCTCGTTGGTGGCGCTGTGGAGCTGAGCGATGCAATCGGAGCTGTGGAGGTCGGCGTCGAGGGGGACGCTGAAAGCGCCGGTGCCATCGAGCTTTC
CGGCAGCCTTGCTCTCGTACTCACCGTTGGTGTTCTTGCACTTGATCGCCACTTGGA