Detailed information on CNT30117564


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696300Oryza nivaraOryza sativa76.2310099.44356forward

Expression of CNT30117564

Peptides detected in this lncRNA

>peptide 1 (58 aa)
PVSISMFRAGKDGAARGVFIGNFSFKNWLCDVDNSLGFWWNDFSMPNIIRLLEDSNRE*

>peptide 2 (47 aa)
LSLSLCSEQVKTGQQEVCSSVIFPSKIGCVMLTIPSDSGGMILACQT*

>peptide 3 (32 aa)
MRPACTCYAPSMHAIRRSGYVRWLAVKVCINS*

Sequence

>CNT30117564
CCTGTCTCTATCTCTATGTTCAGAGCAGGTAAAGACGGGGCAGCAAGAGGTGTGTTCATCGGTAATTTTTCCTTCAAAAATTGGTTGTGTGATGTTGACA
ATTCCCTCGGATTCTGGTGGAATGATTTTAGCATGCCAAACATAATTAGGTTGCTAGAGGATAGCAATAGGGAATGATAACCTGAGATACAAAATTACCT
TGTAGTCATACAATGAGGCACTCCAAACCACTATCTCAGGAGGGTTTCCCGATAGGAATGATGAATTAGAGAGAGATGATTCAACACTGGCCAGAACATT
GCGCACTCTGTACTCAACTTCCTCTTCTGTGAAAATGAGGCCCGCTTGTACCTGTTATGCTCCATCAATGCATGCAATCAGGAGATCTGGATATGTTAGA
TGGCTAGCAGTGAAGGTTTGCATAAACTCTTAAGCTCAATTCTCAACATAAACCTTGCATAGTGACC