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Detailed information on CNT30117528


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695707Oryza nivaraOryza sativa86.5583.8399.64560forward
CNT30108239Oryza nivaraOryza longistaminata26.7423.3899.42173forward
CNT30103001Oryza nivaraOryza rufipogon86.5582.2399.64560forward
CNT30577269Oryza nivaraOryza barthii27.3644.0399.44177forward

Expression of CNT30117528

Peptides detected in this lncRNA

>peptide 1 (72 aa)
PVKASELATPAAGRPSKETGSLCRMSSGGIDRGLCAPPSVLPTGAAAASLDFGCAPAGSVELTIRWRNVLHD*

>peptide 2 (57 aa)
SQSERASYSSCWPAVERDRITLPDEQRWDRSWIVRASVRPADRRGGRELRFWLCSCW*

Sequence

>CNT30117528
CCAGTCAAAGCGAGCGAGCTAGCTACTCCAGCTGCTGGCCGGCCGTCGAAAGAGACCGGATCACTTTGCCGGATGAGCAGCGGTGGGATCGATCGTGGAT
TGTGCGCGCCTCCGTCCGTCCTGCCGACCGGCGCGGCGGCCGCGAGCTTAGATTTTGGCTGTGCTCCTGCTGGTAGTGTTGAGCTAACAATTAGGTGGAG
AAATGTTCTACATGATTGATCAAGATCAAAGCAAAGAATCGTTCCATATTTCTACATCAACTGAGAGTTGAAGGTGACGAAGGTATAGAGTAGCAAGTTT
GATAGCTAAAACAAATGAGGCCAGGAATGAAGAGCATAGGCTCCAGCCACAGAGGGAAAAGAAAGGTTGAGTAGTGCTTTGCGCAGATTGGGGGGACTCT
CTTTTTCTAAATGATTTAGTTGATGACCAAATGTTTTTTTTTCTCAGATTACTATATTTGTTTTTTAATTTTTAAGGCGTGACATATCACAGGTTATGAT
TTTTCAATAAGTAGATTTAATGGCTGAAAAAAAATTTAAGTGAAAACCGATGATAAGATGTTTTGTGCTTTCCTTTTAATTTCTAAGTTTTTTCTAATTT
TCAAATGTGACATATGGTGACTTAATAGCGCAATGACACATAGTGAC