Detailed information on CNT30117422


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694848Oryza nivaraOryza sativa85.9423.7586.81379forward
CNT30554546Oryza nivaraOryza glaberrima36.9621.589.57163forward
CNT30369973Oryza nivaraOryza glumipatula38.781.9187.72171forward
CNT30578555Oryza nivaraOryza barthii44.6788.3494.42197forward

Expression of CNT30117422

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MEVKKPVGSRRRQLVLKMLTPISGDGDVASREEDSISWRHNRPAVQAVTPVGGG*

Sequence

>CNT30117422
CGGCGATGAAAACGATAAGGCCAATGAACATTAGCAGAATCATGCAGCCATGGAAGTGAAGAAACCAGTCGGCAGCAGACGTAGGCAGCTTGTGTTGAAG
ATGCTGACGCCTATTAGCGGTGACGGCGATGTAGCCAGCCGTGAAGAAGATAGCATCAGTTGGCGTCATAACAGACCAGCCGTGCAGGCGGTGACACCAG
TCGGCGGCGGATGAGGCGGCCGGTCGGAGAAGCGGCCGGTCGGTGAAGACGTAGACGCCCAACAACGGCGGCATAAAGGCCAGCCGTGCAGGCGGAAACA
CCAGTCGGCGGCGGACGAGGCGGCCGGTCGGTGAAGACGTAGACGCCCAACAACGGCGGCATAAAGGCCAGCCGTGCAGGCGGAAACACCAGTCGGCGGC
GGACGAGGCGGCCGGTCGGTTAAGACGTAGACGCCCAACAA