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Detailed information on CNT30117283


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT001799, E-value = 3e-21

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696140Oryza nivaraOryza sativa37.219.6689.6346forward
CNT30102801Oryza nivaraOryza rufipogon63.0164.4798.63586forward
CNT30574732Oryza nivaraOryza barthii42.3786.2190.86394forward

Expression of CNT30117283

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MICSLKTILPLVHNTECKTTNSKPKCMFEKN*

>peptide 2 (49 aa)
MVLLTRVIPIIKTGVYSFTSSFFGPICPFHSCPMSHHDMFSKDHIAAGS*

>peptide 3 (93 aa)
RVIDYPYPLRNRPSSRCYKLTPTPSSSKINPSFASPFPRVLAPSQRNKIAPPPGVATRGTTSVEHLRPSPTAVCPCFDRTVPRAVELRRSVTP*

Sequence

>CNT30117283
CCGAGTCATCGATTATCCTTATCCATTAAGAAATCGCCCTTCCTCTCGCTGTTATAAGCTCACTCCTACCCCGTCCTCATCCAAAATCAACCCCTCATTC
GCTTCCCCTTTTCCCAGAGTTCTTGCTCCATCTCAGAGAAACAAAATCGCGCCGCCGCCGGGTGTCGCTACGCGAGGGACGACGAGCGTCGAACACCTGC
GACCGTCACCGACCGCCGTCTGCCCCTGTTTCGACCGCACCGTGCCACGCGCTGTCGAACTTCGCCGTTCCGTCACTCCGTGATTCCGAGGGAATTGTTG
AGTCGATTGAGGAGCAGGGACAGCAAGACTGCGATCAAGTGGATGGCAATGAAGTCGAGGAGGATCCCTATGCTTAACTTCAGGAGGATGCGGAGGACGA
CGGCGCTCCGTAGGTCTTAGTTACGGTCGTTGCCGGTGGCAATGGTGTCGCCGCTGCCTTGATTCCGCTGCTTATCTATCTCTGCTTTTGGGATGTATTC
CGGACCGTTTGGTCCTATGTTCTAAGACTGCCTACGGGCCTATGATGTAATAATTCGCGCTAGACAATCTTTGTATGCGCACTTGATATTTCAGCAATGT
AATCGTGAGTACTAGACTACTTGATCCAGAGAAATGGTACTATTAACACGAGTGATTCCTATTATAAAAACGGGGGTCTACAGTTTCACTTCTTCCTTTT
TCGGCCCTATATGCCCATTCCATAGTTGTCCGATGTCCCACCATGATATGTTCTCTAAAGACCATATTGCCGCTGGTTCATAACACTGAGTGCAAAACTA
CCAACTCCAAACCAAAATGTATGTTTGAAAAAAATTGAAATTATGAAAAACTAAAATATTTTAACAATGAAAATAGAAAATAAATTTGTACTATTGAGAA
AATTTAAATCAAATTTGAATTAATCCAAAT