Detailed information on CNT30117275


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30107123Oryza nivaraOryza longistaminata73.0374.2598.2666forward

Expression of CNT30117275

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MCMHSCWLKEIIQGDMMPKQEDRGQGCSR*

>peptide 2 (41 aa)
MNAILASIAQVDSGDILEKKKSIVVMRKAQEEDKRTSEAAS*

>peptide 3 (29 aa)
FCSPSSSPFFFFLRIRAEDRGGGDRVDGA*

>peptide 4 (58 aa)
FALLPPPPSSSSSEFERRTEAAATVWMGLSRRRHRRDGEGSRSRLATSHSRPSNASYE*

>peptide 5 (51 aa)
MIYWMYLSICAYSFPPSNRTCTTHFLVFLSQISLNLIKFIKEKHSNIFSTKQ

>peptide 6 (68 aa)
LLLSFLLPLLLLPPNSSGGQRRRRPCGWGLAGGGIDGTGRDRGVGSPPRIRDLQMQAMSETEEISGNG*

Sequence

>CNT30117275
CTTTTGCTCTCCTTCCTCCTCCCCCTTCTTCTTCTTCCTCCGAATTCGAGCGGAGGACAGAGGCGGCGGCGACCGTGTGGATGGGGCTTAGCAGGCGGCG
GCATCGACGGGACGGGGAGGGATCGAGGAGTCGGCTCGCCACCTCGCATTCGCGACCTTCAAATGCAAGCTATGAGTGAAACGGAGGAGATCTCAGGGAA
TGGCTGAAGTTGCATTGGACGAATCTTGGTCCGACAAGCCTCCAAGACAAACTTGGATTCAATTTCGTTCTGGCAGATCGGTATGAATGCCATCCTCGCA
AGCATTGCGCAAGTTGATAGTGGTGATATTCTTGAAAAGAAAAAATCGATAGTGGTGATGAGAAAAGCACAGGAGGAGGACAAGAGGACAAGTGAGGCGG
CAAGCTAAGAAGACGGTGGCTTGGCGTGCTTGGCGTAATCTAACTTGATTACCAGGCAGAGGCAGACAAACACTGGATTCTAGCTCGATGGAAGATGTTC
CTGCCACATGTGCATGCATTCATGCTGGCTTAAGGAAATTATTCAGGGAGACATGATGCCCAAGCAAGAAGATCGAGGGCAGGGCTGCTCCAGATGAGAT
CATCAGCCGCAGCTACACCTCTACCTCTGCTTCTTGTTTTCCTCTACCTGTAGGCTGTAGCAACAAGTTTTCCTCTACCCCTCTGCTTCTTGTTTAGCAA
CAACAATAGTACTACTGCTCTGCTTCCTGTGTGTCATCTGCATCAATGATCTGTGATGATCTATTGGATGTATCTCAGTATCTGTGCTTATAGCTTTCCA
CCATCGAATCGAACATGCACGACTCATTTTCTGGTATTTCTCAGTCAAATTTCTTTAAATTTGATCAAATTTATAAAAGAAAAACATAGCAATATTTTCA
GTACAAAACAAA