Detailed information on CNT30117235


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT001499, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30595776Oryza nivaraOryza meridionalis6.124.1984.62195forward
CNT30103940Oryza nivaraOryza rufipogon94.1986.3699.93013forward
CNT30578208Oryza nivaraOryza barthii13.1364.7199.76420forward

Expression of CNT30117235

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MTLHKFHDFSPIIIVHCQFCCPSMKRIWN*

>peptide 2 (30 aa)
MSVNEFYTRGPGAHFLPFPSWFTPFAMDIL*

>peptide 3 (29 aa)
MHCLPVIYLHYLHLRLLSFGRLSEIQNES*

>peptide 4 (32 aa)
MFHVSLHQLKYLMDVHILKQVEIDLSGWSYKY*

>peptide 5 (32 aa)
MSFIPGDREHISYHFLHGLLPLPWISYDFHET*

>peptide 6 (36 aa)
MVGHFRLDKCCLLFGSKSSSSEPELHFPGVSCPGQL*

>peptide 7 (42 aa)
MVVFDHSLRSFSIALVNLLGEVHYNSLYDIEGEFFCFSVIWE*

>peptide 8 (50 aa)
MHCFKTMNPVPFYFFNSKSLIIHFASLVYHRSVDNYGSFIHDSGRSIICL*

>peptide 9 (60 aa)
LMLIFLIQKYMLVLHLIRYICYHVCTHCNYFSYFYLQSYGTRFMVAHGFGKSIPMKNGGI*

>peptide 10 (45 aa)
MHLIWYSLSELVSHICAADALPSCNLSPLSSFAVTLFWSSVGNSE*

>peptide 11 (49 aa)
YADFFNTKVYVGFTLDKVYMLPCLYTLQLFLIFLPPIVWHQVHGSTWVW*

>peptide 12 (61 aa)
MTMGTLYFTAVGGCPSMANILGIDHVYSDATLFDLPSKPEKIAIVGRGYISWSSLAFTPAQ*

Sequence

>CNT30117235
CTTATGCTGATTTTTTTAATACAAAAGTATATGTTGGTTTTACACTTGATAAGGTATATATGCTACCATGTTTGTACACACTGCAATTATTTCTCATATT
TTTACCTCCAATCGTATGGCACCAGGTTCATGGTAGCACATGGGTTTGGTAAATCTATCCCAATGAAAAATGGTGGTATTTGATCATTCCCTTCGTTCCT
TTTCTATAGCTTTGGTTAACCTTCTGGGTGAGGTGCACTACAATTCCTTGTATGACATTGAAGGTGAGTTCTTTTGCTTTTCTGTGATCTGGGAGTGAAG
GAAAGGTTTCCTACAATTCCTCGGTTTTTCCAATTTGCATGATTTCTTGTATAGCTGCTCATCTTCCTGTAACCTGCAGTGAAGACTTATGTCCTTATCC
CCCGGTCTTATAAATCCTGCAGAATTTGCACATTAGAGGTGACCTTTTAATGGATTTTCTATTTTAAATATAATTTGCAGCAGACCGTAGTTGTCTGAAA
ATCCTTAATTTTTCTCCTCTGTTTCTGTGAAACTGTAATTGAACTGCCTATATATGGAATGATAAATAGCTGATGATATGTTTTAGTCATCATTTTATTT
TAAGTTCAGGCTAAACTAAATTCATGATCTATCTTTAGCTTTTCTATTGAATTTTCTAGCGCTTAAGCTAAAGAGTTAGTCACCAGTAACAAAATTTACT
AATATCATGAAGACCAATGAATGTTTGGTGCGTGGTCGGAATCCACCAACCTTGAAACTCCCTGCCATCCATATGTAGCTTTTTGAGATTTCATATATAG
CTTCATAATGTAGGATGTTGTGAAATAACTATATGACTTTCCATCAGAAGTTATACTTTTAGCTTGCTTTCATATTTGGTTTACTGTCTGCATACTCAAA
TACACCTGAAACTAAAATGCATGTTTTCTTTTGCACATCAGTGCAATGTTGTTTCCCTTGAGGTGATGATGATATGACCATGGGAACACTTTACTTCACA
GCAGTTGGTGGCTGTCCATCCATGGCAAATATTCTAGGAATAGATCATGTCTATTCAGATGCAACATTATTTGATCTGCCTTCAAAACCTGAAAAGATTG
CGATAGTAGGAAGAGGGTATATTAGTTGGAGTTCGCTGGCATTTACACCGGCTCAATAAGTGATGTTCGTTTTCAAACTGCATTGCCTGACCAAAAATAT
TATCAGTGGGAACTAGGTTGTTCTCAGGTTTTTAATGGTTGTCACATGGATAGTTCTTTCTACTACTTTCGCTATGTAGGTGTATATCTGTGGGAGTAAT
ATATGTTCCATGTGTCTCTGCATCAACTAAAATACCTGATGGATGTACACATTTTAAAACAAGTTGAGATTGATCTGAGTGGATGGAGTTATAAGTATTA
GAAAAAAAAGGATGGTTCGAACGGAACACAACAACCGTGGCTGATTAAACTGACAAAATAGCATTTGAATTGATATCATTAGTCTTTTTCCTCCCCAAGA
GAGAAAACAACACAAAAGATCATTAGCCTTTCTAGCTCTGCTTTAGATGCAACTAAGCTCAGCACTTGCGTAGAATCAAAGTTCTCTGAAACAAGGGATA
CATCTGAATGTCTCATCTAAATCATCTGAACAAATGCATTTGATTTGGTATTCTTTGTCTGAATTAGTGAGTCATATTTGTGCTGCAGATGCACTGCCTT
CCTGTAATTTATCTCCATTATCTTCATTTGCGGTTACTCTCTTTTGGTCGTCTGTCGGAAATTCAGAATGAAAGTTGAATGGTTGGGCACTTTCGGTTAG
ACAAGTGTTGCCTGCTGTTTGGAAGTAAATCATCATCATCTGAGCCTGAGCTGCACTTCCCTGGCGTTTCTTGTCCGGGACAACTGTGACACTATTTTTC
TTAAATTGTCAATCATGACTTTGCACAAATTTCATGATTTTTCACCCATCATCATAGTGCATTGTCAATTTTGTTGTCCTTCTATGAAAAGGATTTGGAA
TTGAATTCCTTGTTTGTATCGTATTAAACGACAACTTGGTTTCTGATAGCAATGCAGTGAAAATAAGTAGTATAATGCAACAATTTTGTCTGTATGTGTT
AGCAAATCCAAGTCAGCCTTTACCATGAAATATGAATCACAAGTCAAGCATATGTGCTTAATCACCCGTTTTAGCACCTGCATGATATGAATCATCTGGA
GTTATCCCTGGGTAGAAAACGTGCAGGCTTATCATATTGTTCGGCGAGTTGTTGATGGAAGCTTTTTCAAAGTTGGTCCCTTGACTCTACATGTCTGTAA
ATGAGTTTTATACCAGGGGACCGGGAGCACATTTCTTACCATTTCCTTCATGGTTTACTCCCTTTGCCATGGATATCTTATGATTTTCACGAAACATAAA
AGCACCTCATGTTAGGAATCCTCCCCATTTCAGCAGCAAATGCATTGCTTCAAAACAATGAATCCAGTTCCATTTTATTTTTTTAATAGCAAATCCCTGA
TCATACATTTTGCATCTTTAGTGTATCATAGATCAGTTGATAACTACGGATCATTCATACATGATTCTGGCCGCTCCATAATTTGCTTATAATTTTATTC
TCAAATCAAATGTAAAGATGTTCATAATTACTGCATAATTTCTTCTGCATGATTCTTTGTTCCTGCAAATGTTGTTCTTCTCCTCCCTCTACTTGGCCTC
AGATCAAATGATTTGAGGGGCAGAAAACGAAACATGATGGTATTCAGTATCAAAGCTAAGTTTTTTTTTATTCTTTTGCAGTCATAAAATTTGATGGAAT
ACCAATGCCTGTTGCGGGGTAATTTGCCCTCAATCTGAGGTATTGCCATGAGTATTATCATTTTCTCCCTGTAAATTGCAACAAGGTGTTTTATTAAATG
GCTGCTTCGTTATAACATGGTGTTCTGTTCATGTGAACTTGTGAAATGGCTGAGAAGTTCTTTTTAGCTAAAGTGCAGTAGTTGTGCTATGTTGTGAAGA
GTGAAATGAAGTATTAGCAAAAGGGTGAGACATGGGTTAAAGTTCCAGTGATATGAAATCGTTCATCCCTGTCTTGATTCCTGGAAGATGATATTTTTTT
CCAAGTAGCTTTGATGAAATGTAGCAATGAGTAAATGACCAAAATTGTAATAATCTTTGTATGGATTTGAACACCATCGATATGATTTTTTAAATGAAC