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Detailed information on CNT30117205


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694963Oryza nivaraOryza sativa23.1798.9194.12272forward
CNT30596580Oryza nivaraOryza meridionalis39.7851.1588.87467forward
CNT30370781Oryza nivaraOryza glumipatula52.2143.4498.21613forward
CNT30102507Oryza nivaraOryza rufipogon62.3510099.73732forward

Expression of CNT30117205

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MNASVCSYTHIIESIYYKQIYEYMISHPQRRDM*

>peptide 2 (77 aa)
MVFALPLHLRNDRQLRLHWPALLPAMVKMESDHSATVASGVHPALVVVHSTLVVVVDQVLAVYQDWVLAIGQALVAH*

>peptide 3 (34 aa)
MGCGGWSGFGGTLGLGTGGPSGLGCGSWSGLDGS*

>peptide 4 (44 aa)
MKPNVESERINLNGPWSSWFLPSRYTSGMTGSSGFTGRRFFRLW*

Sequence

>CNT30117205
TTCTTTCATCATGCGGTCAATGAATCGATGGCAATGATGACTGATGAATGCAAGTGTGTGCTCATATACACACATAATTGAATCCATTTATTATAAACAA
ATATATGAATATATGATCTCACACCCTCAAAGAAGAGATATGTGAGCTCATAGCAACAAACTCAGAAAGTAACACACATCTACACGGATGACAGACATGG
CATGCACGCCGTTGATACAATAAAGAAATACACAAATGAAACCAAATGTAGAATCTGAACGTATCAATCTGAATGGACCTTGGTCATCATGGTTTTTGCC
CTCCCGTTACACCTCAGGAATGACCGGCAGCTCCGGCTTCACTGGCCGGCGCTTCTTCCGGCTATGGTGAAAATGGAATCTGACCATTCGGCAACGGTGG
CATCTGGGGTGCATCCGGCTTTGGTGGTTGTTCATAGTACTCTGGTTGTGGTGGTTGATCAGGTTTTGGCGGTATATCAGGATTGGGTCTTGGCGATTGG
TCAGGCTTTGGTGGCCCATTAGAAATAGGCTGTGGCGGCTGGTCAGGTTTCGGTGGCCCATTAGGATTGGGCTGTGGAGGTTGGTCAGGTTTCGGTGGCC
CATCAGGACAAGGTTGGGGTGGTTGGTCTGGCTTTGGTGGCATATCGGGATTGGGCTGCGGTGGCTGGTCAGGCTTTATCGGCCCATTCGGTATAGGTTG
TGGTGGTTGGTTAGGGATTGATGGCCCATTTGGATTGGGTTGTGTTGATTGGTCCGGCACCGAAGGCGCATAAGGATTGGTTGACCCATCAGGTTTAGGC
ATTGACAGCATATCAGGCTTCGGTGGCCCATTAGGAATGGGCTGTGGTGGTTGGTCAGGCTTTGGCGGCACATTAGGATTAGGCACTGGTGGCCCATCGG
GTTTAGGTTGTGGCAGCTGGTCGGGTCTTGATGGCTCATAAGTATTGGGCAACCCATCAGGTTTAGGCATCGGTGGCATGTCAGGCTTTGGCGGCTCATT
AGGATTGGGTTGTGGTGGTTGATTAGGATTCGGCAATGGTGGCCCATCAGGTTTAGGTTGTGGTGGTTGATCAGGACATGGTTGTGCCGGGGGGGTTGGT
GGCCCATCGGGTTTAGGCATCGGCAGTACATTAGGCTTATTCATCGGTGGCGCATCAGGATTGGGCAGTGGTGG