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Detailed information on CNT30117172

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30695053	Oryza nivara	Oryza sativa	39.02	29.35	97.72	263	forward
CNT30554442	Oryza nivara	Oryza glaberrima	39.02	39.73	100	263	forward
CNT30596616	Oryza nivara	Oryza meridionalis	25.67	14.95	98.84	173	forward
CNT30102719	Oryza nivara	Oryza rufipogon	39.02	37.52	100	263	forward

Expression of CNT30117172

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MAIAQSSNVVGRVVKPKPKPKLRSLLLLPPVP*

>peptide 2 (44 aa)
MAGRASSSWPAAGWPWPPWAPGRVPWWTWWVALWSEPGWWASAGA

Sequence

>CNT30117172
AGCATGGATGAGAAAAAAGATGACAGATCTATGATCCGGGCAAAGATGGAATAATACAATGAATCAATGATGATGATGACAGCAACATAAAATAAATTAA
AAGTAGATGATCTCAGTGGTACAGTACAAGGGCGGGCAGGCAGCAGCTAGCAGAGTCATATCGTGGGCGTAGCAGAGAGAAGAAGAAGAAGAAGAAAGAA
ACAAAAGAATCCGAGGCATGGCGATCGCTCAATCATCAAATGTGGTTGGGAGAGTGGTAAAGCCAAAGCCAAAGCCAAAGCTAAGGTCCCTCCTCCTCCT
CCCTCCCGTCCCGTAAAAGAATCGACGAGCAAAATACAGCGCAAAATGTGGTGGGGCGCACCGGCCGCTGCCATCTGCGTCGTCGTCGTTGCTCACGTCG
TTGCACGACGCCGTTTTGCTTAGGCGAGGAGGGCGACGAGGCGGCGGGGGCCTTAGCCTTCTTGGAGTGCTTGGGGGACTCGGCGACGGCGACGGGGGCC
GGGGCGGGGGCCTTGGAGCTCTTCTTCTTCTTCTTGGATGGCGGGGAGGGCTTCTTCTTCTTGGCCGGCGGCGGGGTGGCCTTGGCCGCCTTGGGCGCCG
GGGCGGGTGCCTTGGTGGACTTGGTGGGTGGCGCTTTGGTCGGAGCCGGGGTGGTGGGCCTCGGCGGGGGCGGG