Detailed information on CNT30117170


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671899Oryza nivaraSetaria viridis18.3938.192.580forward
CNT30214822Oryza nivaraHelianthus annuus14.2523.6690.3262forward
CNT30102715Oryza nivaraOryza rufipogon65.2918.9898.59284forward
CNT3050085Oryza nivaraCucumis sativus21.1519.0983.792forward

Expression of CNT30117170

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MPHPAITALLLRLQAGWMSLFFSLGLIHKDPSVLPST*

Sequence

>CNT30117170
AGGGCCACGACACAACACAACAAATTGGTTGCAGATTAAACAGTGACTAGGGAAATTTTCAGAGAAAAATACATAGGCACGAAATGACCCAATGATAATC
TTCAGCTTCAGTATATGGTTTCCACCGTTCCAAATCAATTATTGATACCAAACAGAGGGCACAAATAAAACCATGGAAAATACAGGATCCCAAATGTCAT
GATGGGGTAGCGGTAATCAGATAATGCCACACCCAGCAATCACTGCACTTTTACTGCGGCTTCAAGCTGGGTGGATGTCTTTGTTTTTTAGTTTAGGTTT
GATACATAAGGATCCCTCTGTTCTGCCTTCCACTTGAGGGAGTTACTTGGGGCCAATGTCCTTCAGCGCACAGATCTGCTCCTCCCCCATGGCAGACATG
ACAGTCACAACAAGATCCTTGCCTTCACCAAATCC