Detailed information on CNT30117155


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30352907Oryza nivaraEragrostis tef26.9317.4282.41108forward
CNT30370675Oryza nivaraOryza glumipatula10053.68100401forward
CNT30102427Oryza nivaraOryza rufipogon10059.599.75401forward

Expression of CNT30117155

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MRPIPGTRTIPRLGPSVRIHFIETLFWRSNRYFLREP*

>peptide 2 (72 aa)
MHRYIRYSLGPIRPMRYGLDANEDQNLMESRQVGDKVREDGRHPGDQLCVDETDSRHPNDPKARTKCQDPFH*

>peptide 3 (36 aa)
VLKVLVIFLHIFVAIPHDAPVHTVFPGADPSNEVRT*

>peptide 4 (32 aa)
GSQSSRHLSAHLCSHTSRCTGTYGIPWGRSVQ*

Sequence

>CNT30117155
GGTTCTCAAAGTTCTCGTCATCTTTCTGCACATCTTTGTAGCCATACCTCACGATGCACCGGTACATACGGTATTCCCTGGGGCCGATCCGTCCAATGAG
GTACGGACTTGACGCAAACGAAGACCAGAACCTGATGGAAAGCAGGCAGGTTGGTGACAAAGTGCGAGAAGATGGAAGGCACCCCGGTGACCAGCTCTGT
GTAGATGAGACCGATTCCAGGCACCCGAACGATCCCAAGGCTCGGACCAAGTGTCAGGATCCATTTCATTGAGACCTTGTTCTGGAGATCAAACAGGTAC
TTCCTCCGAGAGCCGTAGTGCCATACGTACATGACGAGCATGAACACGAAGGCAAATACGATTGGCGCCCATCCTCCCTGAGGAACTTTAGTGACTGCTG
C