Detailed information on CNT30117137


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694885Oryza nivaraOryza sativa97.3993.0699.04523forward

Expression of CNT30117137

Peptides detected in this lncRNA

>peptide 1 (80 aa)
AALCLPFSRLLFLGNSLCLYSYASHRFPRPIHLCTQVHGMRRCLRNAVCLRIYTGSPSSATPCRPSTPTPTPAPVLEKGR*

>peptide 2 (75 aa)
MHTGTRDEKVPSKRCLLENLHGLSFLCNAMSTVNTDTNTRTSTGEGTMMMASGARHPQRTNHSWRRAGEEGGWSD*

>peptide 3 (40 aa)
MCSYRRFTSSTRLPAPLYSFKVTKPKPQLVSPTSSLQLKRN

>peptide 4 (39 aa)
LLCVFLSLAYSSSETLCASIPTLATASLVLFTYAHRYTG*

Sequence

>CNT30117137
AGCTGCTCTGTGTCTTCCTTTCTCTCGCTTACTCTTCCTCGGAAACTCTTTGTGCCTCTATTCCTACGCTAGCCACCGCTTCCCTCGTCCTATTCACCTA
TGCACACAGGTACACGGGATGAGAAGGTGCCTTCGAAACGCTGTCTGCTTGAGAATCTACACGGGCTCTCCTTCCTCTGCAACGCCATGTCGACCGTCAA
CACCGACACCAACACCCGCACCAGTACTGGAGAAGGGACGATGATGATGGCGTCTGGCGCGCGTCACCCTCAACGAACCAACCACTCGTGGAGGAGAGCT
GGAGAGGAGGGTGGTTGGTCAGACTAGTCTCACTCTCATCTGCGCGAGTGTTGTTGGGTTGTCGTGTCGTTTGTGTGCTGTGCTGCTGCTGCTAGCTAAC
TGTCGTTTGTTGGCATGTGTTCTTATCGTCGGTTTACTAGTAGTACCAGGCTACCAGCACCACTTTACTCATTTAAGGTAACCAAACCAAAACCCCAACT
TGTCTCACCAACCTCCTCTCTCCAACTAAAGAGAAAT