Detailed information on CNT30117104


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671641Oryza nivaraSetaria viridis23.0932.5788.73142forward
CNT30554357Oryza nivaraOryza glaberrima72.6810096.42447forward
CNT30680120Oryza nivaraTriticum urartu19.3524.4484.87119forward
CNT30370667Oryza nivaraOryza glumipatula80.1695.9196.15493forward
CNT30102728Oryza nivaraOryza rufipogon75.2891.596.98463forward
CNT30551372Oryza nivaraOryza brachyantha28.1336.1290.17173forward

Expression of CNT30117104

Peptides detected in this lncRNA

>peptide 1 (78 aa)
MISIQDSDRGVSVNGGEDQVRLTGKFLSDGVRLPCAASATSGRTIAAAMAAAVSPAVALSFIDADALTAILAAAAGAS*

Sequence

>CNT30117104
TGAGATTGAATTTCAGTGGCTTTTTTATCTAGTGTAGTTCATATTTACAGCAGTTAAAAAAAAATACAGAAGCACTGATCAGTAGCTTCGGGAGCAAACA
ATATTTGGAAACTAGTAGCCTTTTGCGCAGGTATAGTGTCAAGAACAATATACAGCAATAGAATTATGGAAGCAATTAACCATCAACAACTCCATATCTC
CATATCGTAAATCAGTTTACAGAATCTCCAAAACAACACTGCAAAGAGACGATGATCTCGATACAAGACAGCGATCGAGGCGTGTCTGTGAATGGAGGAG
AAGATCAGGTCCGCTTGACGGGGAAGTTCTTGAGCGACGGCGTCAGGCTGCCCTGCGCGGCCTCCGCGACGTCGGGGAGGACCATCGCCGCCGCCATGGC
CGCGGCCGTCAGCCCGGCCGTCGCCCTCTCCTTCATCGACGCCGACGCCCTCACGGCCATCCTCGCCGCCGCCGCCGGGGCTTCTTGAGCCCGGCCACGG
ACAGTGGCCGCGCCGCGACGGCGGACAGCGACGCGGTTGTGGCCATGGAGGATGAAGAAGAAGAACTCGCGGTGCTTTCTTGGCGCGAGAGCGAGACGAG
GTGCAAGTGTGTGGG