Detailed information on CNT30117006


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30371221Oryza nivaraOryza glumipatula82.3245.7699.23647forward
CNT30104142Oryza nivaraOryza rufipogon64.7677.2499.61509forward

Expression of CNT30117006

Peptides detected in this lncRNA

>peptide 1 (44 aa)
TVSTQAAAIQCIFSPKGIGCSLHAPASSSSRALLFSRAPNPHGC*

>peptide 2 (88 aa)
MSHRSKREIAPPTPQALPPGVPWWGGVVKPGVAFPLSGEAMAVPSWWTAPPLQSNSFVSPYGAWMGAVPTPPDGQGSQNTSNDPLERT*

>peptide 3 (76 aa)
MEYKEGVLLQFVEKGYVLSLVFRMHDFQTARCGTSRFISENPLAANDSLPVRLLGAVNLHHAPRRAPASLLHPIHHH

>peptide 4 (49 aa)
TPYRHKLPLFNAFSRQRGSGVPCTPLRLPPRALSSSPGRQIPMAANLPA*

>peptide 5 (94 aa)
HRIDTSCRYSMHFLAKGDRVFPARPCVFLLARSPLLQGAKSPWLLIFPRSLCAKSPSYSRGRPKPSLPLIHKSTACRSVFLKLIPNPHISSNLK*

Sequence

>CNT30117006
ACACCGTATCGACACAAGCTGCCGCTATTCAATGCATTTTCTCGCCAAAGGGGATCGGGTGTTCCCTGCACGCCCCTGCGTCTTCCTCCTCGCGCGCTCT
CCTCTTCTCCAGGGCGCCAAATCCCCATGGCTGCTAATCTTCCCGCGTAGTTTATGCGCCAAATCACCCTCTTATTCCCGCGGTAGACCCAAGCCAAGTT
TGCCCCTAATCCATAAATCCACCGCTTGTCGCTCAGTCTTCCTGAAACTCATCCCTAATCCTCATATCTCCTCAAACCTCAAGTGATGAGCCATAGATCC
AAGCGGGAGATTGCTCCTCCAACGCCTCAAGCTTTGCCTCCCGGCGTTCCTTGGTGGGGTGGTGTAGTGAAGCCCGGCGTCGCCTTCCCTCTGTCTGGTG
AAGCCATGGCTGTTCCAAGTTGGTGGACAGCACCTCCACTGCAGAGTAATTCATTTGTTTCCCCATATGGAGCTTGGATGGGTGCCGTACCAACACCACC
AGATGGCCAAGGCAGTCAAAATACATCCAACGATCCATTAGAGCGGACATAAGGATGGAGTACAAGGAGGGGGTGCTCCTCCAGTTCGTCGAGAAGGGCT
ATGTTCTTTCCCTCGTTTTCCGCATGCACGATTTTCAAACTGCTAGATGCGGAACGAGCAGATTTATAAGTGAGAACCCTCTTGCTGCCAATGATAGCCT
TCCGGTTCGTCTCCTTGGTGCTGTGAATCTGCACCACGCTCCCCGTCGCGCTCCAGCTTCCCTCCTCCACCCCATCCACCACCACC