Detailed information on CNT30116942


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30102132Oryza nivaraOryza rufipogon94.5391.7399.372073forward

Expression of CNT30116942

Peptides detected in this lncRNA

>peptide 1 (52 aa)
KTLPLTPNPPAPYPCAPFPHPRHNSSNLFTLCYPTLTHIDPIFSDLRERGGG*

>peptide 2 (59 aa)
MHEAPNFDALIRIFMCSVVKLFMQYVCSKNCSHLYFICSVIYLCVQCSEHRQYHHHQVL*

>peptide 3 (39 aa)
MFKKLLPSVFHLFSDIFVCAMFGTPPIPPSSGSLIFMID*

>peptide 4 (40 aa)
MSRNTVGQHLDIREFMRLSTIILSNFLLVHFLYVIWIWFV*

>peptide 5 (32 aa)
MLPNANTYRSYFFGSKRERWWLVELLSTDAPG*

>peptide 6 (35 aa)
KHSPSHPTPRHPIPALPSPTHAIIRVICLLYVTQR*

>peptide 7 (29 aa)
MFCVLDYVLWSKVVCSDLGFVFRDVSMIE*

>peptide 8 (70 aa)
MITFFFPVDVTKHCRAAFRYQRIHETFNYNPIKLLAGSFFICDLDLVCVTLTSTEILNFSGFYTSTGFCN*

>peptide 9 (61 aa)
MNMCICLVVVFGELGCYVQQYFSLFSPYHENMCILSPMCNFVGHLTEQKFNYYDITMFLFLL

>peptide 10 (88 aa)
MCRPGSSSPHNPPAGLDLPSLSGAPAACLLSLLSSRGWGPSGRPPPRYRASLSSSRKMQVSAYLFYHLDISLYVLCSRLCFVVEGCMQ*

Sequence

>CNT30116942
AAAACACTCCCCCTCACACCCAACCCCCCGGCACCCTATCCCTGCGCTCCCTTCCCCCACCCACGCCATAATTCGAGTAATTTGTTTACTTTATGTTACC
CAACGCTAACACATATAGATCCTATTTTTTCGGATCTAAGAGAGAGAGGTGGTGGCTAGTGGAGCTGTTGAGCACCGACGCCCCTGGCTAGGAACGGCGG
CAGATCTGGCGGCTCGGTGCGAAAGCTGAACGGCGGCAGTTACAAGCCCGGCCGTCCTCCAGGCGCGGTGATCCTCCGCCGCCGGCCGACCTCATCCTCA
TCCTTTCTCCCGCCGTCTGGTCGGCGCTATTTGAGGTGCGCCGGGCGGTGGCTCGGTGGAGCGGTTGAGCGACGGCTGTCGGCTAGGAGCAGCGACAGAT
TTGGAAGCTCGGTGCAGAAGGTGAACGGCGACGGTGACAAGCCGGCCGTCCTCCATTCGTGGCAATCCATCACCATCGGCCAACCTCATCCCCGTCTTCT
CTCTTGCCGTCTGGTCGTCGCCATTCGAGATGTGTCGCCCGGGTTCGTCGTCGCCGCATAATCCACCTGCCGGCCTGGATCTGCCCTCCCTCTCTGGCGC
ACCTGCCGCTTGTCTCCTCTCACTGCTGTCGTCGAGGGGATGGGGCCCTTCCGGCCGCCCTCCTCCCAGGTATAGGGCGTCACTATCCTCATCCAGGAAG
ATGCAGGTCAGTGCATACCTGTTCTACCACTTAGACATCTCTCTGTATGTTTTGTGTTCTCGATTATGTTTTGTGGTCGAAGGTTGTATGCAGTGATCTA
GGATTTGTTTTCCGCGATGTGTCAATGATAGAGTAGAAGCAGATCGAGAGATGCTGATTTTGTACTAGTATGTAGTGAATCTGAATGTATGATTACATTT
TTTTTTCCTGTTGATGTCACGAAACACTGTAGGGCAGCATTTAGATATCAGAGAATTCATGAGACTTTCAACTATAATCCTATCAAACTTCTTGCTGGTT
CATTTTTTATATGTGATCTGGATTTGGTTTGTGTAACACTAACATCCACTGAGATTCTGAATTTTTCAGGCTTCTATACATCCACTGGTTTCTGTAATTG
ATAGGTTAGCAGGCTTTTCTAATTGATTTTTTCGTGAATGCCGCTTTTGCTGGATCAGCATCATGCGTGAATAGTCCTGTTGCCAGGCTGTTGTTTTTGC
AATGCATGAAGCACCTAATTTTGATGCTCTCATCAGAATTTTTATGTGTTCAGTCGTGAAATTGTTTATGCAATATGTATGTTCAAAAAACTGCTCCCAT
CTGTATTTCATTTGTTCAGTGATATATTTGTGTGTGCAATGTTCGGAACACCGCCAATACCACCATCATCAGGTTCTTTGATATTTATGATAGATTAAAA
TTTAAGAAGTTTGTGTGTGCAATGTTCGGAACACTGCCAATACCATCATCATCAGGTTCTTTGATATTTCTGATAGATTAAAAATTTAAGAAGCTCGATT
CAATAGCAGTTCTCTGAAATTTCGTGGCTCAACAAAGCAAATCGATTTATTTTCTCTGAATTGCTCACTACATATGGTCCTATAGAACATATTTTTTCTC
TCAATATTTTGACGCAACAAACTTCACACTAAAATTTCTGAATTTTTTGGTTGAACAAAGCAGGTGGTTGATCCTGGCTATTGTTCTTCGTGGTCGTGGG
TAACCTGCTTCTGCTGAGGAGAAGATCTGGAGATTCTCATGTCCTTTTGTCTCAGTTCTGGATTGCTGCAACAATGTGTCTATGCTTGCGTTTTCTTGAT
CTAGATCTTGAGGCGAGACCGTACTGGTGTTATTGCATTTAATTTGTTTTTTTTCCCGATTCTTGGGTAAATGCTTCACTTGGGCTTGTTGAGTTTCCAG
GAAAGAGATCCAGGAGGGGAGCACTTTGTGGGGTGATTTATCCTTGATTCTAAAATGGGAGGATAGCTGGCACCAGCGTGGTGGTGGTGTTTTTCTTGGA
TCACGATGAATATGTGTATTTGTCTAGTTGTGGTGTTTGGCGAGTTGGGATGTTACGTGCAGCAGTATTTTTCTCTTTTTTCCCCTTATCATGAGAATAT
GTGTATTTTGTCTCCCATGTGTAATTTTGTTGGTCACTTGACAGAACAAAAATTCAATTATTATGACATAACCATGTTCTTGTTCTTGTTAAT