Detailed information on CNT30116867


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672419Oryza nivaraSetaria viridis34.0221.0892.6882forward
CNT30520974Oryza nivaraSetaria italica39.4211.5493.6895forward
CNT30435258Oryza nivaraAegilops tauschii36.9331.3488.7689forward
CNT30657122Oryza nivaraTriticum dicoccoides36.9317.0288.7689forward
CNT30130810Oryza nivaraLolium perenne36.9317.1887.6489forward
CNT3010486Oryza nivaraZea mays33.28.7991.2580forward
CNT30679308Oryza nivaraTriticum urartu34.0212.5289.0282forward
CNT30720193Oryza nivaraTriticum spelta36.9316.388.7689forward
CNT30338878Oryza nivaraEragrostis tef39.4212.1890.5395forward

Expression of CNT30116867

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MAIRPWGTSSTVQRICMDGSDQEEGEAETRNLI*

>peptide 2 (36 aa)
GGINPWRSGHGGLAVQYRGFAWMDRIKKKVRQRRGI*

Sequence

>CNT30116867
AGGGGGAATTAATCCATGGCGATCCGGCCATGGGGGACTAGCAGTACAGTACAGAGGATTTGCATGGATGGATCGGATCAAGAAGAAGGTGAGGCAGAGA
CGAGGAATTTAATTTAGATCTTGCCGCGTGGGCCGGGCGTCGGCCACCAGCGATCCGCCGCCGAGCAGCAGGAACTTGAGCAGGAGCCCCCTCTTGGTGA
AGGGCCCCGCGAACGTCTCGAAGAACTTGCTCTGCATCGAT