Detailed information on CNT30116844


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30382729Oryza nivaraTriticum turgidum12.1825.3581.48162reverse complement
CNT30553755Oryza nivaraOryza glaberrima87.5285.1599.661164forward
CNT3067525Oryza nivaraLeersia perrieri49.5578.5585.43659reverse complement
CNT30596287Oryza nivaraOryza meridionalis19.3249.3397.67257forward
CNT30370286Oryza nivaraOryza glumipatula94.3696.3299.121255forward

Expression of CNT30116844

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MRPPLRTPRCSTPCPCQHWQRKIKEQISW*

>peptide 2 (55 aa)
MFALWRLLWPSGWGITFRSPMVPFPFNSFFIFQDGEETAQPANQHPPKATNTALG*

>peptide 3 (49 aa)
MVRRQLSQPISTHPRPLTLPWDEISGMTSCCSSDLCYWRFCRSQFDDGC*

>peptide 4 (71 aa)
MVTERRRGGVQMSISTKAMIAATRSPMRLNAASSSDSSVQHTLPMSALAEKDQRTNLLVIGGMLKQDESGS*

>peptide 5 (56 aa)
MSCLLIIWHMFFGKVKHGNMPCSNAALVSIYLFTLKFHASSCDKNTCNQARSFLLS*

Sequence

>CNT30116844
CCAAAGCTATCAATTCAGGCTAAAGATGAAGAGACTATTATACCAATAAACATGACTTACAATAGGATGCATTACAATTAAGCAATTATTTAACTTGAAA
AATCAGGAGCCAATGCCTTGCCTTCCTGCTTTCTCCAACAACCTTCACCCCGCACATCTTTGATTCTTCAGAGAAGCAATCAAGCTTCTCCCATCAGAGG
ACTCACAGTCCTGTAGGTACTCCTCCACCTCAGCAGCAAGGGTAGATGGTGACTGAGCGCCGCCGTGGCGGTGTGCAGATGAGCATCAGCACCAAGGCGA
TGATCGCAGCGACGAGAAGCCCCATGAGGTTGAATGCGGCCTCCTCTTCGGACTCCTCGGTGCAGCACACCTTGCCCATGTCAGCACTGGCAGAGAAAGA
TCAAAGAACAAATCTCTTGGTGATTGGTGGTATGTTGAAGCAAGATGAAAGTGGCAGCTAGAAGAAGAAGGCTTCTTGGCAAAGGTGTGTGAGCTTCCTC
TGAAACTCTGGTTGTGATGTTTGCTTTATGGAGACTGCTATGGCCAAGTGGTTGGGGCATCACTTTCAGGTCTCCCATGGTGCCATTCCCTTTTAATTCA
TTTTTCATCTTCCAAGATGGTGAGGAGACAGCTCAGCCAGCCAATCAGCACCCACCCAAGGCCACTAACACTGCCCTGGGATGAAATTTCTGGGATGACC
AGTTGCTGCTCCTCAGATTTGTGCTACTGGCGATTTTGTCGCAGTCAATTCGATGATGGTTGCTGATGGTGAGATGAGATGAAAACTACACTGGATGCAC
TGATGATACTCCTGGTGAACTTGCAAAAGTTCAGAGATCTTACTTTCTGAAGGCTGTTGAAAAGTAATTCACTTCTTCAGTGATTGAAGTCCTGGAAACA
AAACAAGGTTGATTAGCATTTGCTGATGGCTACATTTCGTTCCCTGTGAAACACATCTAATTCAGGTTCAGCATTTGAGTTTAGGTAGTAGCATACATTG
GGTGACACATGTTGTGTGTCGGTGTGACTTAGACCTGCAATGAGTTGCCTTTTAATAATCTGGCACATGTTTTTCGGGAAGGTGAAGCATGGCAACATGC
CTTGTTCCAATGCAGCTCTTGTATCTATCTATTTATTTACTCTGAAATTCCATGCATCTTCTTGTGACAAGAATACATGCAATCAAGCCAGAAGTTTCTT
GCTTAGCTAAGCAGAGTCCCATTTCAGCTGGACACTGATGAATTCATGCGAGATAAACTAATTTGCATCTGATCTGGAGCTCCATTAGAATCCAAAAGGA
GAAGCCAAAAGAACTAAAAAGGGAACAGGG