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Detailed information on CNT30116682


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002291, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552964Oryza nivaraOryza glaberrima45.3488.0199.23389forward
CNT30596220Oryza nivaraOryza meridionalis17.7223.2486.84152forward
CNT30550878Oryza nivaraOryza brachyantha27.5123.3983.9236forward

Expression of CNT30116682

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MWTSSENHDDSMAGSYPWDHNGWWTEPSLFNMNTGTKI*

>peptide 2 (50 aa)
MGYCMMISMLMEPLPERRECGHPQKTMTIQWREAILGITMDGGQNRHCLI*

Sequence

>CNT30116682
AATGGCTAGTACCGTCCCCGGTCAATTAAGGACCGAGCCATGAAGTTAAGCATGAAACGACCCCCGTACAACCGTACTTCTCGTATGGGTATAGACCTAG
CGGATTAGATAGCCGAGCGGAGGCAGTATCCCTGCATAGATGGTTCACCCCTGAGTGAGGCAGGTGCGCTACGGTGGGACAGCCGTTGAGGTAGGGCCGA
GAGGCGTGCCCTACATCGGTGTCGCCATTGGTAGGACTGCCATGAGTGTGTGAGAGAGAGAACTTAACTTGAACCATAATTTAATATGTGTGTGAGACTT
CTCTTTCCCGGGAGCGCCAGAACTCCTCTCACTGCTAGAAACATGGACGCCTAGAGTGCATGAGGATTTAAGTTCATGGAGCGGGTACTGCCAATGCGAG
GTTATCGAAAAGCTTTGCCGTGACGCGTCTCATGTGTTGGGACGAGGCTCATGTGTTGGGCAGTCGCGGAGTGCGGGTAAAGTGTACATCCACTGCAGTG
TGAGTAAACCAAATCTATTCGAATAGCCGTGCTCGCGGTTATTGAGCACCGGGACATGTATTACACTTGGCTAGACTCTAAATTCTTAACTTGTGTGGGA
TGGGATATTGCATGATGATTTCTATGCTGATGGAGCCACTTCCTGAGAGGCGGGAATGTGGACATCCTCAGAAAACCATGACGATTCAATGGCGGGAAGC
TATCCTTGGGATCACAATGGATGGTGGACAGAACCGTCATTGTTTAATATGAACACTGGTACTAAAATTTGATCAGTCTGTGCTAGGTCTTAGGCTTGTG
AAAAGAATTACAAAACTTGCTTTGCGCAAAAGAACCATAGCCATCCTTTGAATACCCC