Detailed information on CNT30116594


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004820, E-value = 9e-121

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690982Oryza nivaraOryza sativa89.5548.7790.66257reverse complement
CNT30554083Oryza nivaraOryza glaberrima10026.1993.73287forward
CNT30369237Oryza nivaraOryza glumipatula59.9315.8180.81172reverse complement
CNT30104394Oryza nivaraOryza rufipogon63.4145.6185.71182reverse complement
CNT30577766Oryza nivaraOryza barthii63.4126.9286.26182reverse complement

Expression of CNT30116594

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MVRKYLHNCRLQFTACNLYKLSIIFTLLQLCPKPELICCLKYY

Sequence

>CNT30116594
TCCCGGCCTTTGCTCATTAAAGCTACAACTAATTATTACAAGGAATCACATAAACAAAGAGTGAAGTTCAAATAAAATTAAATACACCTAACGATAAAAA
AAACAAAACCAAGAAAAGGAGCACACATTTATTCAAGTCTATTTTTGAATCTCCATCAATGGTTCGCAAATATTTGCATAACTGCCGTCTCCAGTTTACG
GCATGCAACCTTTATAAACTCTCCATCATTTTTACACTTTTGCAGCTTTGCCCAAAACCGGAGCTAATATGTTGCCTTAAATATTAC