CANTATAdb - search

Detailed information on CNT30116570

BLAST search results

BLAST vs Swiss-Prot:
sp|P35792|PR12_HORVU, E-value = 9e-24

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30696385	Oryza nivara	Oryza sativa	34.01	59.64	100	235	forward
CNT30444949	Oryza nivara	Saccharum spontaneum	37.19	29.88	86.38	257	forward
CNT30371110	Oryza nivara	Oryza glumipatula	27.64	64.53	99.48	191	forward
CNT30558873	Oryza nivara	Panicum hallii	10.56	20.62	87.67	73	forward

Expression of CNT30116570

Peptides detected in this lncRNA

>peptide 1 (49 aa)
DEFGICKMHFQRLIMHQLLMCIYTKKLFIIKIITCFIVHGRRSQSHKHR*

>peptide 2 (40 aa)
MATASTAARLTLEGAIFCLVLFRGMNGVGNMVLIYNLFVWK

Sequence

>CNT30116570
TGGACGAATTCGGGATCTGTAAAATGCATTTTCAAAGGCTTATAATGCATCAGCTGTTGATGTGCATATATACCAAGAAATTATTTATTATTAAGATCAT
TACATGCTTTATTGTTCACGGACGTCGATCCCAGAGTCACAAACATCGATGAAATGTACTGCGGCAGCGACATAGCATGCAGTTCAACACGACTGTGTAC
GAGTGAGTGGTCGTCTACTTGGCCGCGGCGTCGAGGGTGAGGAACGGGCGCTCGCCGTTGAAGTTGCCCGGGGGGTCGTAGTTGCAGTTCTTCTTCTCGC
CCACCCACGACGCCACCGCGTCGGCGGCGCTCCAGGCGCGCCCCGCCGAGCCCCAGAAGATGTTCTCGCCGTACGGGCCGCCGGAGTGCTGCAGCCGGCA
GTCGCCGGCGCGCTTGGCCGCGTAGCTCTGCGCGAAGCTGGCGACCTTGGGGTCCCAGCTCACCGGGCCGACGCCGTCCGCGCGCCGCGCGCTGTTGTGC
AGGTTGACGTAGTCCTGCGGCGTGTTCTGCGCCGAGGTGGTGGTGGTGGCCGCCATTGCCAGCGAGATGGCCACGGCGAGCACGGCGGCGAGGCTGACCT
TGGAAGGTGCCATTTTCTGTCTCGTGTTGTTTCGTGGGATGAACGGAGTTGGAAATATGGTGCTTATTTATAATCTGTTTGTGTGGAAAAG