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Detailed information on CNT30116486

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30596178	Oryza nivara	Oryza meridionalis	96.65	100	98.96	577	forward
CNT30101469	Oryza nivara	Oryza rufipogon	85.43	100	99.8	510	forward

Expression of CNT30116486

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MRDIYAIRVMLALLRLHACNRDQYVIGWSV*

>peptide 2 (66 aa)
MDEACGQLAISKNKSYEAEIAALKNQNAALQMKIQALENYRQAKHKEYAELETIYKKLKAKHSNCR*

Sequence

>CNT30116486
ATGCTGCTTTGTCTATTTAAGCGTACGTAGGAAGCGAGAAACATGCTAAGTTAGCCACTGAACAAGTGTTGTAGTTCTGCAAACAGAACTAGCTACGATA
TATCTAGCTCAATATAATGGATGAAGCATGTGGTCAGCTAGCAATAAGCAAGAACAAATCGTACGAGGCTGAAATCGCTGCCTTGAAGAATCAAAATGCA
GCCCTCCAGATGAAGATACAAGCACTGGAGAATTACAGGCAGGCTAAGCACAAAGAGTATGCAGAACTGGAAACCATATATAAGAAGCTCAAAGCAAAGC
ACAGCAACTGTCGTTGATAAAATGGATTAAATTGTATATACCCTTGCATGTACCTACGTACTATTAGTGCATGGGAGTATACTATATATGTGTGTGCCGA
GAATAAAGCTGTATACTGATCAAGCTATATCGTAGTAGTACGTCTAAACGTATGTAACCTGAATGCATGCGAGATATATATGCAATAAGGGTCATGCTAG
CTCTCCTTCGTCTCCATGCGTGTAATAGAGATCAATATGTAATTGGCTGGTCAGTATAATCAGTGGATATAAAATAATTAATTTTATATGCGCAGTT