Detailed information on CNT30116435


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT003825, E-value = 2e-125

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553531Oryza nivaraOryza glaberrima50.857298.4625forward
CNT30370011Oryza nivaraOryza glumipatula44.6788.8396.36549forward
CNT30108812Oryza nivaraOryza longistaminata26.8521.1590.61330forward
CNT30576046Oryza nivaraOryza barthii79.7478.7897.14980forward

Expression of CNT30116435

Peptides detected in this lncRNA

>peptide 1 (75 aa)
MAAAGSGDNGGAACGGGWPGRGGDRSTRDLCVEIWCGECCLELPSRLKASARQTNYVIHGLFALSIYFHYFLCDM*

>peptide 2 (69 aa)
MSAVVVETSAGEVAANGSRRIRRQRWRCLWRRLARARRRPVDKRLVCRDLVWRVLPRVTVKVKGKCTTN*

>peptide 3 (52 aa)
FFSVSLPPHSSPLLPLNRPDGDPLVAAACRGGRRREAASVEGSSGRRVAAGW*

>peptide 4 (33 aa)
MFMRLFMPFRFQVYLMFTTLFLFSIFQILILVK*

Sequence

>CNT30116435
CTTCTTCTCTGTTTCTCTTCCTCCTCATTCATCTCCCCTTCTTCCTCTCAACCGACCTGACGGCGACCCGCTGGTAGCAGCGGCGTGCAGAGGTGGCAGG
CGGCGGGAGGCGGCCTCTGTTGAAGGTAGCAGCGGCAGGAGGGTGGCGGCGGGATGGTAGGCTGTGGCGCCCTCCGGTGAAGGCGGCAGCGGCGACCGCA
CCCTCCCCTCCACCAGATCCCGGGGAGAGGGGAGGCGGTGACCCGGTGGCGGCGGCCGTGGGTAGCCATGTCGGCAGTGGTGGTGGAGACTAGCGCAGGC
GAGGTGGCGGCCAATGGCAGCCGCCGGATCCGGCGACAACGGTGGCGCTGCTTGTGGAGGAGGCTGGCCCGGGCGAGGCGGCGACCGGTCGACAAGAGAC
TTGTGTGTAGAGATCTGGTGTGGAGAGTGTTGCCTCGAGTTACCGTCAAGGTTAAAGGCAAGTGCACGACAAACTAATTATGTGATTCATGGATTGTTTG
CTCTATCTATTTATTTTCATTATTTTCTATGTGATATGTGACTCTTATGTTCATGCGATTGTTCATGCCATTTAGATTTCAAGTTTATCTAATGTTTACA
ACGTTATTCTTGTTTTCAATATTTCAGATTCTGATTCTGGTTAAATAATTTAAGTTCCATGCTTGCTGTTGGCGGCTGTTAAATGTCGATTCTATACCGC
CAACATCTGCATAAAGTTCAGATAATAAAACAACCAACATAGTGATAGGTGCTTAATCTCACATATTCCACAAGTGTTGGTGTATATTTGTATGCAGATG
ATAAACCCTGATGTTGGGAGGAAATCTAGACTAAAGTGAGGAGAATTATGTATCCATACAAGGAGGGGTTGTGAACTTCATCAAAACATCAGCGAATCAA
TCCAAAACTCTGAGAAATGGACAGAGGAGAGCCTAGGGAGTCCGTAGTCCGAAAGCCAAGCCAGGAGAGCCCATCATAGGTTCGCCCGAACCCCCTGGAT
CGGCCGAACCCCCCTGATCCCTGTTGATGCTCTCCCAATGACGGTTGTGGGGCAGTTCAGACATTTCCCCTTCTCACAACCGTCATAACTGCCCTATAAA
AGGACATCACTCCCTCACTTCACACACACAGTTCCAAGCTTGAGCTGAATTATAAGAGGCTCTATTTTTCTATATTGTATACTAGAATAGGAAGAGAGTA
GAGTAGAAGGAGTTGGAAGAATTCCGGAG