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Detailed information on CNT30116389


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30595702Oryza nivaraOryza meridionalis11.7120.1485.71119reverse complement
CNT30105818Oryza nivaraOryza longistaminata1935.6787.56193forward

Expression of CNT30116389

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MSFRSLNSQNTYPNPNTYYSVSFRSQIVTTPSGSYMALMWHATQT*

>peptide 2 (31 aa)
MGELAVPEQWPSSLSSTDLAKTANRLGEVKY*

Sequence

>CNT30116389
GTTTTACCAAAATAAAATAATCATGCATGCTAAATGTTTATAATTCAGTAAATTTGCATTAATGGTATACAATTTGTAAACACGACCTTCTAAAATACTC
CCTCCATCCCAAAATCTAACATTTTTTTAGTACTTAGGATTTATCCCAAAATATAACAACTTCTCCACCAACATTTCCATCCCAACCAATCACGACCCTC
CACCATTCACTTTTCCCACCTACTTTCACTTCTCAACCAATCACAACCTCACCCTATTTAATTCTACCTAGTTTCTTAATAACCATGTCCAACTTTAAAA
CTTATATTTTGGGACGGAGTTAGTACTCATTTAAGTACACAAATTTATGTAGTATGAGTGAAGTCCAAAACGACACACCATAGCTAACATTGCAAAGTTA
GGTGCCATATAGGATGTGGTGGCAAGCAAAATCATCTTCCAATTGGATGAATGGGTGAACTTGCCGTTCCGGAACAATGGCCCTCTTCACTATCTAGCAC
AGACTTGGCAAAGACTGCCAATCGACTGGGTGAAGTTAAATACTGATGGAGCTTTTGTGATGGTTTCATTTTTTTTCACGATCTAAAGAAGAAGAGGTTT
TCTTAGCGGGTGTGAATCCGGTGGCTTCTCCTTCTATTCTGTTGTCTCACTTATGAGGCACATAAGTTTGGAGCACTGGGAGTGGTCATGCAAAATGACA
CCGGAGGTTTTATGGCGGCCGTAGCACATTATCATCCAAGGATTCAAGATGCTACCACGGGGAAATTCTAGCTTGTCGCGGGGCAGCTGATCTTGCAGAA
GAGTTAGGAGTTTCCAAACTAATGAGTAAAGTGTACGGGCGGTCCTTAAATTTGTAGAGGTATGTCATTTAGATCCCTAAACTCTCAAAATACATATCCA
AATCCTAATACTTATTATAGTGTGTCATTTAGGTCCCAAATCGTCACAACCCCTTCAGGATCCTATATGGCGTTGATGTGGCATGCCACACAGACATGAC
ATGGCATTATATTGAC