CANTATAdb - search

Detailed information on CNT30116120

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT003478, E-value = 1e-177

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30552216	Oryza nivara	Oryza glaberrima	14.83	20.6	85.34	116	reverse complement

Expression of CNT30116120

Peptides detected in this lncRNA

>peptide 1 (35 aa)
LSLLLCRPSVDLPYRSIAGQAIASIPSPRRGKSIF*

>peptide 2 (30 aa)
LSSLMPAVGRSPLSEHCRPSHRVNTFASTR*

>peptide 3 (45 aa)
SLFSYAGRRSISLIGALPAKPSRQYLRLDEVNPFSNFPLPSPLRD*

>peptide 4 (46 aa)
MFHRRRCRPPSTRTPAPFSPSTRLPGRNRREETKEEEGEKKKKIKD*

Sequence

>CNT30116120
CTCTCTCTTCTCTTATGCCGGCCGTCGGTCGATCTCCCTTATCGGAGCATTGCCGGCCAAGCCATCGCGTCAATACCTTCGCCTCGACGAGGTAAATCCA
TTTTCTAACTTTCCCCTTCCTTCCCCCCTCCGAGATTAGCCACCACCACCACCTCCCATACCGGCCGGAGCTAAGCCCTAACCATCGCCGTTCCGGCCTC
CTCCCTTACTCCCTCTCCCGACCACCACCCTGCCCGGATGCGCGTCGCTCGGGAACATGTTTCACCGCCGACGTTGCCGTCCCCCGTCAACTAGAACACC
GGCGCCCTTCTCTCCCTCCACTCGGCTCCCAGGAAGAAACAGAAGAGAAGAAACGAAGGAAGAAGAAGGCGAAAAGAAGAAAAAGATAAAAGACTGACGG
GTCTTGAGGATTCTTCTGACACATTAGATAATATCAGTCAATCTCAGGACATCGAGCAAGGCAAGTTACTATCTACCTTTTGATCATTTAAGCCTATATT
TTACAAATTATTTATTTATAGCCTTCTATTCAATACTCTATTTTATATACATAATTCAACCATAAAAACCCAGATAATTTAGTATTGCTTATCTTGCTTA
CAATCTGGTTAAAATATTTTATACTTAGATTGGGACAGTACGTAAGAATTAGATGATTTCCAGGTGGCTAGTACTGTCTCGATCGATATAGTAATCACCA
GGTACTTATGTCGAACGAACGGGTACGACCGCAGTTTCTAGAATGGGGACAGACCTAGTTATTATGTTAATTAGCAATGTGG