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Detailed information on CNT30115925


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT003018, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691413Oryza nivaraOryza sativa46.1837.2594.91393forward

Expression of CNT30115925

Peptides detected in this lncRNA

>peptide 1 (39 aa)
STTPLSPSGARRKLTPLPTPPRASSRGRRRRRELTRPAT*

>peptide 2 (98 aa)
RLLRSPHPAQGASSRRCQRRRARAPAAAADAASSRGLPPKPRAHAACRLRRARAPTDAVARELPQPPPPPPCASSRRYPTLAASGHGGSGAGYHFSPI*

>peptide 3 (81 aa)
LDYSALPIRRKAQAHAAANAAARELPRPPPTPRAHAACHLSRELTRPAASVALELPPTPSRASSRSRRLRRRAQAHAATPR*

Sequence

>CNT30115925
CTCGACTACTCCGCTCTCCCCATCCGGCGCAAGGCGCAAGCTCACGCCGCTGCCAACGCCGCCGCGCGCGAGCTCCCGCGGCCGCCGCCGACGCCGCGAG
CTCACGCGGCCTGCCACCTAAGCCGCGAGCTCACGCGGCCTGCCGCCTCCGTCGCGCTCGAGCTCCCACCGACGCCGTCGCGCGCGAGCTCCCGCAGCCG
CCGCCTCCGCCGCCGTGCGCAAGCTCACGCCGCTACCCCACGCTAGCTGCCTCAGGCCATGGAGGATCTGGTGCGGGCTACCATTTTAGTCCTATTTAGT
CCCTTCAACCAAACAGGCTATGACTAAAAAGGACTAATGTTTTAGTCTTGGGGCTAAACTTTAGTCCTAGTCCTGGGACTAATGTGTATCCTTAGTTCCT
AACTTTTTTTTCAAACTTACAACTATTTCATCACATCGAAACTTTACTATACACACAAATTTCTAATCTTTCCATCACAACATTCCAATTTCAATCAAAC
TTTTAATTTTGATGTGAACTAAACACACGGTTAGACTATTAGAACATCCGCAGAGCAGTACTGGAGGAGGGTGGAGGAGATCGGAAGGCTCGGCAAGTGG
CTGGCCACCGAGGACGAGCATGCATGTGCATGCTGGAATGCTGGGTGCTGCCGCAAACTTAATTCGTGTTATGGGAGACTCGGTCGGCCCACGACGGTGA
ATGGATTAATTAACCTCACGAAGCTAGTATCTAGATCAGCATCGACAGCTGGTGAGTCTTGGGAAGAAGAAAACGGCGGGTGGCGAGCTTCATCACCGCC
TTCTCGGCCCTGTTCACTTTAATGTCATTTTTAACCTTATCAATTTCTGGC