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Detailed information on CNT30115645


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT000136, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690635Oryza nivaraOryza sativa102.7479.5595.77638forward
CNT30552347Oryza nivaraOryza glaberrima101.4595.8990.48630forward
CNT30369315Oryza nivaraOryza glumipatula98.3991.3397.87611forward

Expression of CNT30115645

Peptides detected in this lncRNA

>peptide 1 (70 aa)
MKLSLGPATATCCRCHLCLLTSSTSAPSIDLFTRSDRWPAGISMDRCGCKFYCSALAICNWLCRQCSRYR*

>peptide 2 (89 aa)
MEQMRKEEGTKRRRRRHCCSISLLLLLSLFVLLTLLHIALLTGGQSMPRRGGGEPPPAPTSSGGSHEAFTWPGYGDVLPVPPLSPDKQH*

>peptide 3 (67 aa)
MHGANEKGGRDEAAAAATLLLDLVATASVLVRPPHIAAHRPAHRRAVHAQARRRRATAGADLQRRLP*

Sequence

>CNT30115645
ATTAAAAGGCAGAGATAGATCATAGATGCATGGAGCAAATGAGAAAGGAGGAAGGGACGAAGCGGCGGCGGCGGCGACATTGCTGCTCGATCTCGTTGCT
ACTGCTTCTGTCCTTGTTCGTCCTCCTCACATTGCTGCACATCGCCCTGCTCACCGGAGGGCAGTCCATGCCCAGGCGAGGCGGCGGCGAGCCACCGCCG
GCGCCGACCTCCAGCGGCGGCTCCCATGAAGCTTTCACTTGGCCCGGCTACGGCGACGTGCTGCCGGTGCCACCTCTGTCTCCTGACAAGCAGCACTAGT
GCCCCATCAATTGACTTGTTCACCAGATCGGATCGATGGCCGGCCGGGATCTCCATGGATCGATGTGGCTGCAAGTTTTACTGCTCTGCACTAGCAATTT
GTAATTGGCTGTGTAGGCAATGCTCTCGTTATAGATAAACTCTTTCCTAGCCCAACGAATCTGGATAAACTTGTAGCCAGATTTGTTAAATTAGCAGGAG
TCACATTTAAGTCTAGGTTAAGTTTTTTTAGACGGAGGAAGTAGCGAGTAGCGATCAACCTGTACTATTGTACTACATGTATCCACCAATTGCTCTAGTA
TGCTTGAACATTGCAGATATG