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Detailed information on CNT30115622


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690657Oryza nivaraOryza sativa12.1451.9599.12226forward

Expression of CNT30115622

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MHHHPENQRRFHRRQHRFRPPLTTRPLRIDAQES*

>peptide 2 (40 aa)
MKPQYNYLYFIDLCPWSFIISIAKVYSGLFLSFHLHTAIL*

>peptide 3 (34 aa)
MHSHCIDPASKSTCTTTPKTNAASTVASIDSGHL*

>peptide 4 (48 aa)
MSMEFYHINCQSIQWSISQFPFTYSDFIVLATQDCFKHNFNPMIKCLL*

>peptide 5 (43 aa)
RLLPIITPKPSYLRGRALSLSVTLFLAVGRGDDDHRHRHRAAW*

Sequence

>CNT30115622
CGCCTCCTCCCCATTATCACTCCTAAGCCAAGCTACCTGAGAGGGAGAGCTCTCAGTCTCTCCGTCACCCTCTTCCTTGCCGTCGGCCGTGGAGACGACG
ACCATCGCCATCGCCATCGTGCCGCGTGGTGACGCCGGAACGCGCCCGTGCCCACGGGAGCTCCGGAACGCCGCCATTTCGACATCATCGTCACCCGACC
ATCCTCGTCCATCTCGGAGCAAGCCGCTGCGCTATCGTCATCGCCTCGACCCCAGGAGCCTGTTCACCGAAGGAATCAAGCCAAGACGCCGTGTACTGCG
AGATCACCATCATTTTTCCCAACTCCGGCCGCCGGCATCGATCTTCGATTCCTGCCGCTCCGCAGCTCGTCGTCCCTGGGGCGCCGTCGCTAAGCCGTTC
CGCAAGTCACCGCTGTCGCCAAGACCTCGACAACCCCAACTTAACCCTCGGTGAGCACCCTGGAGGCTAGAAGGCCACATGCATGCACTCGCATTGTATT
GATCCGGCCTCCAAATCGACATGCACCACCACCCCGAAAACCAACGCCGCTTCCACCGTCGCCAGCATCGATTCCGGCCACCTCTGACCACGAGACCACT
ACGGATAGATGCGCAAGAATCCTAGGAACGTTTTCTCTTTTGGTCGCATCGCGAGAACGGCCGCCATTCATCGCCGGCGCCGGCGACAGTAAAATCTCAA
AAAAGAAATCGCTATTCCCCTCGTTGAGTCACGCCGCCTCTGCTCCCGAGATCCAGCCGCCGCCCACCTCCTTTCCTCCTCGTCACCGTTGCCAGTTCAC
TGCTTCCGCGGCTCCGCCTGCTCTACCTCTTCTCTCACGCCGCCGCCACCTCCCCCTTCGCCATCCAAACCCTGCCCCGCATCCGGCAGAGTCCACCGGA
GCCGACTCCATGTCATCACCACCATACCAGAACCGGCGAGGTTGACGGTGGCTCACCGCGTCCGCCTACTCCCTCACGATCACCGGTGGCGCCTTCACCT
GTGCGTCTACCACTCATCCCTCCGTTGCAGTTGCAGTGCTCTATATCTCTGCATTCTTTTCTCACTCCTTCGGCCTGCTCATAAAAAAAAGGTGTTGTGT
AAGAGATTGGGTAATGGTAATATTTTTATTTACATAGAACACTAGGATTTGATTTGTGTTCATAGAGAAAGGAAAGGGGATACTTTCAATCAATTTCAAA
ATTAGCGTTAAATTCTGAAAAATACATCAATGTATTTTATGTTTTCCTCTGCATATACATTTCTGCAAAAGAAAAGGGAAGTGCAAAATTCATGCAGCTG
TATAGAATAAATGAAGCCACAATATAATTATTTATACTTCATAGATTTATGTCCATGGAGTTTTATCATATCAATTGCCAAAGTATACAGTGGTCTATTT
CTCAGTTTCCATTTACATACAGCGATTTTATAGTATTAGCTACACAAGATTGTTTCAAACATAATTTCAACCCGATGATAAAGTGCCTTCTTTAATCCTG
TTTTACAAAGAAGTCAATGCCTACTTTAATGCTGTTTTGTAAAGAACTCAAGATGTTTACATAAAAGTCAAAATTTGATTGCAGTATAGCTCTGACCTGA
AATAAGTTTCAGTTTGAATCCTGAATAGATGTTCTACCTGAAGACCATGAGTCCATTACTATAAGTGTTCCGTAAATGATCAAGTAATGTATCTAAGAGC
AGTGTAGATACAAAGACTTTGCTTTTGCTCTAAATAATCTGTTCCTTAAAATTTAGTACTGACTACAAGGTCCATGATTTATGATTTTGTTTCAGACCAT
GGAAATAGAGAAGGTTAGACTTATATAATGTTGCTGTTTCAAGCATGAAAAACTGGATGTA