Detailed information on CNT30115552


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696895Oryza nivaraOryza sativa2731.1793.6125forward
CNT30553457Oryza nivaraOryza glaberrima34.7723.5492.55161forward
CNT3067339Oryza nivaraLeersia perrieri24.199.2986.61112forward
CNT30596177Oryza nivaraOryza meridionalis37.1527.5691.28172forward
CNT30102831Oryza nivaraOryza rufipogon66.3176.5686.97307forward
CNT30551842Oryza nivaraOryza brachyantha66.3113.5490.23307forward

Expression of CNT30115552

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MFVNCLYLILNTTEFFLSCFPGYLIPSGRRRLDPEQA*

>peptide 2 (40 aa)
DEMIYGRENNKVKFFSHILRSLRRWLISVSKCLLTVFILY*

Sequence

>CNT30115552
TGATGAAATGATTTATGGACGTGAAAATAACAAAGTTAAGTTTTTCTCCCACATCCTTCGATCACTGAGGCGTTGGCTCATATCTGTTTCAAAATGTTTG
TTAACTGTCTTTATCTTATACTGAACACTACTGAGTTTTTCTTGTCATGTTTTCCAGGGTATCTGATTCCTTCTGGTCGTCGTCGTCTTGATCCAGAACA
AGCGTGATCCCGACCTGCGCGCTTACTTTCTCGGCTTGGATTGATTGATTGATTGTGTGTGTGTTTCTCAGGAAGTCATGCTTTGGGCCGCCTCCTGTAA
TTAAGTTGAATCTGAGATGAACTATTGTTTGAATTCTGTTGCATTCTGATTGTATCTATTATTAGTTGAATCTGAGATGGTATATGTTATTAGGTTTTAA
TCTGAGATGTATGAGAAATTGGATTGAATTTGGTGGGCTCAAATTTAATTGGCCTGTTTAGTG