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Detailed information on CNT30115545


BLAST search results

BLAST vs Swiss-Prot:
sp|Q01859|ATPBM_ORYSJ, E-value = 1e-59

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674413Oryza nivaraSetaria viridis50.8480.3294.04302forward
CNT30378059Oryza nivaraArabidopsis thaliana43.7796.6581.15260forward
CNT30314470Oryza nivaraCamelina sativa44.7856.681.2266forward
CNT30596198Oryza nivaraOryza meridionalis29.6386.2788.07176forward

Expression of CNT30115545

Peptides detected in this lncRNA

>peptide 1 (31 aa)
QQVTSSRTAGLAAHHTKRELNSSLKGSKPNK*

Sequence

>CNT30115545
CAGCAAGTAACAAGTTCACGGACTGCCGGACTGGCCGCACATCACACAAAAAGAGAACTCAATTCTTCCTTGAAGGGCAGTAAGCCAAACAAATAGGTCA
CTGCAAATCCTTATTTGGAAAAAAGTGGAGGGGAAAAACATCGATCAGCAGGGCCGGGCCTCCTGCATGTAAGTACATGTCCTGGCTAACAAACATAAAA
GGCACAACATGTTGACCTCCAAATGTTAAAAATTGCATCGCTTATGAAGCGGACTCCTTGGCAATCTTCTCTGCCTTGGCAATGACCTCATCGATTCCTC
CAACCATGTAGAATGACTGCTCAGGAAGCTCAACATACTTTCCAGGTGCACCCGTGAAAACTTCGGCAACGTGGAAGGGCTGGCTAAGGAACCGCTGAAT
CTTCCTAGCACGAGCGACTGTCAACTTATCATCCTCACTGAGCTCGTCCATTCCCAGAATGGCAATAATATCTTGAAGATTCTTGTAATTCTGAAGAACC
TTCTGAACACCACGAGCTGTGTTGTAGTGGTCCTCACCCAGTACATGGGGAGACAACATTCTGGATGTGGAATCCAAAGGATCGACAGCAGGAT