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Detailed information on CNT30115521


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT006472, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695229Oryza nivaraOryza sativa71.188.7588.33797forward
CNT30552747Oryza nivaraOryza glaberrima35.520.8593.97398forward
CNT30109186Oryza nivaraOryza longistaminata65.1255.9899.18730forward
CNT30102620Oryza nivaraOryza rufipogon42.4640.7598.32476forward
CNT30575420Oryza nivaraOryza barthii35.519.7493.72398forward

Expression of CNT30115521

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MELWQAALAIPVAVQSKDFHVAYAKGQMPHG*

>peptide 2 (40 aa)
MVVQLFGDIKEITIWREAGFMVGEKRLALFLLQFFLSHSL*

>peptide 3 (34 aa)
MASRRSFRDYLRKVFGTLFFRDCLSKLYGCAALW*

>peptide 4 (60 aa)
MSEVFHVFFLMKMIWSCGKLLWQSLLLSRVKIFMWLTLKGRCLMADNLQKRGFGDCSGAR*

Sequence

>CNT30115521
TTTGGAAAGAAAATATACATAATTTGTGGCAAATAATGTTCAGATTTGCAGATTAACATGCTACCAAGGTCAAAACTGTATGTAATACATGCAAGTGTCA
GATTTTTTTTGTTCCCCTACTTTACTAAAACTGTAAATTAGGTTTATAACGTGTTTCTGATATATAACAATAAGAGAAATCATGATATCGAAAAGTATCT
GTTAATGCTATAAGGCATCTGAATATATTGGCTTACTTCTATTGTTTATAATACAGGTTGACATTGTGGCCAACTGGAGATTTTGGTAAAATCCTATCAT
GTTTCACCATGGCATTTCACTGTTTGGCGCACGGTATTTAGGAGCTATTTGTATAGTAAATGCTGGAATATTGAAGTAAATTATATGTTCAGCTTATTAA
CTGCATTGCGATAAGCTTTGATCTAGATCCGGTTTCAATTTTCATTTGTGTGGTCGCATCCTTTAATTTATATAGCTTCATAAGAGTATACTCCGAAGTA
CATGCCGTTTTATGTATTTTTATGCCTTCATATTCTGATTGTCTAATGGCTCTAAAACAACAGACGTAAACTACGATGTCTGAAGTTTTCCATGTTTTCT
TCCTTATGAAAATGATATGGAGCTGTGGCAAGCTGCTTTGGCAATCCCTGTTGCTGTCCAGAGTAAAGATTTTCATGTGGCTTACGCTAAAGGGCAGATG
CCTCATGGCTGACAATCTACAGAAAAGAGGATTTGGAGATTGCTCAGGAGCTAGGTGAATGTTGGCTTTCTGCTTCCCAGTGACCTCAATGTAGACTTGG
CTGATTGGCGGATGGCTTCAAGGAGAAGCTTCAGAGATTATCTCAGAAAAGTTTTCGGTACACTCTTCTTCAGAGATTGTCTCAGCAAGTTGTATGGTTG
TGCAGCTCTTTGGTGACATCAAAGAAATCACAATCTGGAGGGAGGCAGGCTTCATGGTAGGCGAAAAACGATTGGCATTATTCCTTTTGCAGTTTTTTCT
CTCCCACTCTTTGTAACCGGTTTCGACAACTTCGTGTGGACGCTTAGTTTGTAACACCATCTCATAATCTTAATGAATTTGCTTAGCCTACTCTTGGGCC
AGTCTGGCTAAAATAAATGTA