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Detailed information on CNT30115142


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30378674Eutrema salsugineumArabidopsis thaliana38.827.51100158reverse complement
CNT30618774Eutrema salsugineumSesamum indicum28.51.1595.69116reverse complement
CNT3098426Eutrema salsugineumSolanum tuberosum28.7513.8397.44117forward
CNT30592653Eutrema salsugineumMusa acuminata20.883.5594.1285reverse complement
CNT30655299Eutrema salsugineumRosa chinensis21.623.197.7388forward
CNT30680520Eutrema salsugineumTriticum urartu28.754.0496.58117reverse complement
CNT30100822Eutrema salsugineumOryza rufipogon15.7224.8195.3164reverse complement
CNT30578173Eutrema salsugineumOryza barthii28.753.4596.58117reverse complement

Expression of CNT30115142

Peptides detected in this lncRNA

>peptide 1 (83 aa)
QNERDPDRRRELTLGIDREVRELEHKKTLCQTKDAVRDDQLDVWREGFYEELETEREKEARLTLLNSRLRVLIRTREHQPQKN*

>peptide 2 (37 aa)
EREGSRPSSGTNLGHRSGGARAGAQKDALSNQGCSSG*

Sequence

>CNT30115142
CAGAACGAGAGGGATCCCGACCGTCGTCGGGAACTAACCTTGGGCATAGATCGGGAGGTGCGCGAGCTGGAGCACAAAAAGACGCTCTGTCAAACCAAGG
ATGCAGTTCGGGATGATCAACTGGACGTATGGAGGGAGGGGTTTTATGAGGAATTAGAAACGGAAAGGGAGAAAGAGGCCCGCCTTACGTTGCTTAATTC
GCGGCTCCGTGTACTCATCCGGACACGGGAGCACCAACCCCAAAAAAATTAAAGCTTTCGTTCTCTTCTTTTTTTTTACTTGATTGGCAGGTGTACAACA
ACCTTAACCGCGCAAGCCTGGGCTGGGCCTACCTCCATCCTTAGAGGAGCCGTATGAGGCGGAAGCCCCACGTACGGTTTTGAAGCCGAGCCTTTCCAGC
AATGGGG