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Detailed information on CNT30114991


BLAST search results

BLAST vs Swiss-Prot:
sp|Q39255|SKP1A_ARATH, E-value = 1e-56

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30315801Eutrema salsugineumCorylus avellana18.6622.884.66189forward
CNT30516841Eutrema salsugineumJuglans regia16.3920.4983.13166forward
CNT30403855Eutrema salsugineumBeta vulgaris8.1922.884.3483forward
CNT30589619Eutrema salsugineumMusa acuminata7.429.386.6775forward
CNT3059890Eutrema salsugineumArabidopsis lyrata25.5736.0292.66259forward
CNT30686076Eutrema salsugineumTriticum urartu15.154.4579.74153forward

Expression of CNT30114991

Peptides detected in this lncRNA

>peptide 1 (97 aa)
MNSVSQALRSSSEEAPSTASLLEAAESTCFLQYSITLARILLVTLGRGTPLSTQSSSTMCAMVWDSRATASSTSKDSPSELFNTIFFDDISVEKKRRD

>peptide 2 (38 aa)
YARQTNITKAQISNKEQTLVHNCQKKKRKSTRRRIKSS*

Sequence

>CNT30114991
TCTATGCAAGGCAAACCAACATCACTAAAGCACAAATATCCAACAAAGAGCAAACATTAGTTCATAATTGTCAAAAGAAAAAAAGAAAAAGCACGAGGAG
GAGGATCAAGTCTTCATGAATTTTTCAAAAGAAACAAAAAAAAAACAGAGGCAATAGACACTGAAAACGAACGACAATAACATAAAGAAGAAATGGTTGC
TCTTTTGATTCGACACCTTCCTCGAACAAACGCTCATTCAAAAGCCCATTGATTCTCTCTGCGCACCTCCTCTTCTTCCTCGGGTGTGAAGTCGTTCTTG
ATGTTCAGATAATTAGCAGCCTGCGAGATCCACACAAAAAAAAACAAAAAAAAATTAGATCAAAATCCAAACATAAATAAACAATAAGGTCGATTCTGGA
TAAACGAACAAAACCCAAACACCTCCTAAACAAATTTTTAATTCCAGGCGATTCGATTTCAGGAAAAATCAAATCTTTACTCAGTTCATGGCCGATTCCT
TAAGAACCCTAACAATTTCAATCTTAGGCAAGTTCAATTTCTGAAACAAACCCCTAAATTTCGGATACGGAAAATCGAAGAACGAAACCCTAAATTCCCA
AATCGAAAACCCTAAAATCGCAAAATCGAAAGTAAAACAAAATCAGGCAACGAAAATAGAATCGAGAGAAGAGTAACAAACCAGGATGAGTTCGAAGAGG
GTAGCCTGATCGATCTTCATGAACTCGGTATCCCAGGCTTTGAGGTCTTCGTCGGAGGAAGCACCATCGACGGCCTCGCTCTTGGAAGCAGCGGAATCAA
CGTGCTTCTTGCAGTACTCGATCACCTTGGCAAGGATCTTGCTCGTGACGTTGGGAAGAGGGACTCCGTTGTCGACGCAGTCGTCTTCAACCATGTGCGC
TATGGTCTGGGACTCGAGAGCCACCGCCTCGTCAACCTCGAAAGACTCGCCATCGGAGCTCTTCAACACAATCTTCTTCGACGACATCTCTGTGGAGAAA
AAGAGGAGAGATT