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Detailed information on CNT30114697


BLAST search results

BLAST vs Swiss-Prot:
sp|Q1S9I9|H2B1_MEDTR, E-value = 4e-57

BLAST vs NONCODE:
NONTPRT005013, E-value = 2e-46

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674589Eutrema salsugineumSetaria viridis20.2353.4582.26124forward
CNT30523103Eutrema salsugineumSetaria italica20.2318.3482.26124forward
CNT30315505Eutrema salsugineumCorylus avellana21.2128.4584.62130forward
CNT30518188Eutrema salsugineumJuglans regia45.8431.982.56281forward
CNT30702570Eutrema salsugineumQuercus lobata21.212688.46130forward
CNT30375451Eutrema salsugineumArabidopsis thaliana14.3635.3492.0588forward
CNT30618877Eutrema salsugineumSesamum indicum45.0235.0782.61276forward
CNT3072234Eutrema salsugineumQuercus suber29.228.4184.92179forward
CNT30381273Eutrema salsugineumManihot esculenta14.1924.3789.6687forward
CNT30526608Eutrema salsugineumPhaseolus vulgaris21.716.4486.47133forward
CNT30630598Eutrema salsugineumVigna unguiculata44.749.1982.48274forward
CNT30194796Eutrema salsugineumPisum sativum34.0928.6783.73209forward
CNT30163367Eutrema salsugineumPistacia vera40.9530.1384.06251forward
CNT3094085Eutrema salsugineumSolanum tuberosum31.6538.4281.44194forward
CNT30180212Eutrema salsugineumSecale cereale43.8835.5478.81269forward
CNT30283980Eutrema salsugineumTriticum aestivum28.0636.681.4172forward
CNT30220711Eutrema salsugineumHordeum vulgare20.2311.9783.87124forward
CNT30383318Eutrema salsugineumTriticum turgidum41.7627.8678.91256forward
CNT30565715Eutrema salsugineumActinidia chinensis45.5135.5484.95279forward
CNT30586986Eutrema salsugineumMusa acuminata43.3975.1478.95266forward
CNT3086649Eutrema salsugineumVigna radiata43.2335.5281.51265forward
CNT30553165Eutrema salsugineumOryza glaberrima20.2326.9685.48124forward
CNT30171046Eutrema salsugineumTrifolium pratense43.8875.7786.99269forward
CNT30435607Eutrema salsugineumAegilops tauschii43.8834.2279.18269forward
CNT30240867Eutrema salsugineumAvena sativa41.7636.1679.3256forward
CNT30656000Eutrema salsugineumTriticum dicoccoides28.0629.4581.4172forward
CNT30597299Eutrema salsugineumFraxinus excelsior45.685182.5280forward
CNT30447591Eutrema salsugineumSaccharum spontaneum20.2322.7580.65124forward
CNT30130711Eutrema salsugineumLolium perenne20.2318.2483.06124forward
CNT303693Eutrema salsugineumZea mays20.0735.6582.93123forward
CNT30610418Eutrema salsugineumGossypium raimondii45.0228.6985.14276forward
CNT30231835Eutrema salsugineumAnanas comosus20.5519.3885.71126forward
CNT30205622Eutrema salsugineumHelianthus annuus15.3334.8192.5594forward
CNT30129800Eutrema salsugineumCorymbia citriodora44.734.0483.94274forward
CNT30681751Eutrema salsugineumTriticum urartu20.0719.6282.93123forward
CNT30719869Eutrema salsugineumTriticum spelta20.2321.7283.06124forward
CNT30346527Eutrema salsugineumEragrostis tef17.9452.1381.82110forward
CNT30619778Eutrema salsugineumCajanus cajan21.3719.7987.02131forward
CNT30596761Eutrema salsugineumOryza meridionalis20.2315.781.45124forward
CNT30360466Eutrema salsugineumLactuca sativa40.4658.9182.26248forward
CNT30369945Eutrema salsugineumOryza glumipatula20.2317.8284.68124forward
CNT30431330Eutrema salsugineumPapaver somniferum39.9724.9782.45245forward
CNT30570929Eutrema salsugineumVitis vinifera45.5141.5883.87279forward
CNT3052765Eutrema salsugineumAmborella trichopoda20.722587.4127forward
CNT3024772Eutrema salsugineumPopulus trichocarpa25.7726.6482.28158forward
CNT30324987Eutrema salsugineumAsparagus officinalis13.8722.4383.5385forward
CNT30101075Eutrema salsugineumOryza rufipogon21.2118.5485.38130forward
CNT30496069Eutrema salsugineumDigitaria exilis20.2315.5481.45124forward
CNT30176425Eutrema salsugineumVigna angularis21.715.8787.22133forward
CNT30557628Eutrema salsugineumPanicum hallii19.4121.3681.51119forward
CNT30724478Eutrema salsugineumLupinus angustifolius39.840.4678.28244forward
CNT3065708Eutrema salsugineumSelaginella moellendorffii19.2534.0183.9118forward

Expression of CNT30114697

Peptides detected in this lncRNA

>peptide 1 (29 aa)
IKSKTNPKSISKTRNILRIRFFFKNPNHY*

>peptide 2 (52 aa)
MNLFQDLEDVDLVRLDALLLHLLLLIAACAAGFLRQLLPGLWFLLRRSLLGL*

Sequence

>CNT30114697
ATAAAATCGAAAACAAACCCTAAATCCATTTCCAAAACTCGAAACATCCTTCGAATCAGATTTTTTTTTAAAAACCCTAATCACTACTAATTCAAGAGCT
GGTGAATTTCGTCACGGCCTTGGTACCTTCAGAGACGGCGTGTTTCGCGAGCTCACCAGGAAGCACAAGCCTAACAGCAGTCTGAATTTCCCGAGAAGTG
ATCGTAGGCTTTTTATTGTACCTAGCGAGCTTAGACGATTCCTGAGCGAGTTTCTCGAAGATATCATTGATGAAGCTGTTCATAATCCCCATGGCTTTGC
TCGAGATTCCGATATCTGGATGAACCTGTTTCAGGACCTTGAAGATGTAGATCTTGTACGTCTCGACGCTCTTCTTCTTCATCTTCTTCTTCTTATTGCC
GCCTGCGCCGCCGGCTTCCTTCGGCAGCTTCTTCCCGGCCTTTGGTTTCTTCTCCGCCGGAGCCTTCTCGGCCTTTGATTTCTCCTCCACTGGTTTCTTC
TCGGCCGGCTTCTTCTCTCCCTTTGGTGCCATTCTCACAAGATGAAAAGTTTCAAGGAATTTTCAAAGGATGAGATCGTGAGGGCAAGTGAATTTGAGAA
TCGTAAGATGTGC