Detailed information on CNT30113754


BLAST search results

BLAST vs Swiss-Prot:
sp|P51851|PDC2_PEA, E-value = 6e-79

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30534838Ficus caricaEucalyptus grandis57.2144.3280.77234forward
CNT30378612Ficus caricaArabidopsis thaliana25.4333.5586.54104forward
CNT3021436Ficus caricaCitrullus lanatus25.4332.384.62104forward
CNT30157163Ficus caricaPistacia vera84.8479.0478.67347forward
CNT30562763Ficus caricaActinidia chinensis68.466181.07280forward
CNT30553156Ficus caricaOryza glaberrima31.0520.0681.89127forward
CNT30146603Ficus caricaMedicago truncatula32.0334.5685.5131forward
CNT30128751Ficus caricaCorymbia citriodora44.9936.1582.61184forward
CNT30362074Ficus caricaSorghum bicolor27.6320.0788.5113forward
CNT30355760Ficus caricaLactuca sativa46.4528.4482.63190forward
CNT30369917Ficus caricaOryza glumipatula48.933.0681.5200forward
CNT30154533Ficus caricaPrunus persica44.7441.6983.61183forward
CNT30706321Ficus caricaPrunus avium73.8454.7184.11302forward
CNT3026328Ficus caricaPopulus trichocarpa66.7551.784.25273forward

Expression of CNT30113754

Peptides detected in this lncRNA

>peptide 1 (39 aa)
RKSFIRIQPKAGPFAIVTRSGCTMIAFSFFRRREYPTEL*

>peptide 2 (50 aa)
MASQQEHSHMRQRVLQRRPMREQLEVWDRPPELALQPCSRTLLRPQLQPLI

>peptide 3 (53 aa)
EKIFHQNTAESRAIRNCHPIGLHNDRLLLFQKKGIPNRAVIIENRPCKEVSIG*

Sequence

>CNT30113754
GAGAAAATCTTTCATCAGAATACAGCCGAAAGCAGGGCCATTCGCAATTGTCACCCGATCGGGCTGCACAATGATCGCCTTCTCCTTTTTCAGAAGAAGG
GAATACCCAACAGAGCTGTAATCATTGAAAATAGGCCCTGCAAAGAGGTAAGCATCGGCTGACTCCACAATTTCCGCACAGAAGGCAGTGCTGACAGCGC
CCCAATAAGTTCCGATGAAATGAGGGTGTTGCTCCGGGACAAGCCCTTTGGCTGATGGCATCACAGCAAGAGCATAGCCACATGCGTCAGCGAGTTCTAC
AAAGGCGTCCGATGCGTGAGCAACTCGAAGTTTGGGACCGCCCACCAGAACTGGCTTTACAGCCTTGTTCAAGAACTCTGCTGCGGCCTCAACTGCAGCC
TCTAATCCC