Detailed information on CNT30112966


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6PL11|SKP1_ORYSJ, E-value = 4e-45

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671810Ficus caricaSetaria viridis12.3933.689.1683forward
CNT30535942Ficus caricaEucalyptus grandis18.2126.1883.61122forward
CNT30317831Ficus caricaCorylus avellana15.8221.6893.4106forward
CNT30517058Ficus caricaJuglans regia31.1910.1584.21209forward
CNT30628805Ficus caricaVigna unguiculata29.737.2781.41199forward
CNT30303844Ficus caricaTriticum aestivum12.0932.7986.4281forward
CNT30666847Ficus caricaTriticum dicoccoides9.5525.789.0664forward
CNT30259882Ficus caricaBrassica rapa18.6632.7287.2125forward
CNT30136788Ficus caricaLolium perenne18.6622.0584.8125forward
CNT30686076Ficus caricaTriticum urartu12.3929.5487.9583forward
CNT3049296Ficus caricaCucumis sativus12.6935.7184.7185forward

Expression of CNT30112966

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MLNVLRISSGVFPFIMSATVWQGLTRMRSKRVA*

Sequence

>CNT30112966
GCCATTAATAAAGAACACCATTTACCACATTTAACATAAGTAATGAGAGATCCAGATAACATCACGAGTTTTTCTAAATTAGAGAAGACATGGGGAAGAG
AAAGATTTATAGTAACTTAGATTCCCAGAGAAGAGTAAAAGTTTTTCACTGACAAAAGAGGCTTCCCATACTGGAATACAAGCATATATCCATCCCGTCA
CCTCATACATAAAAAGAGAGGAAAAAAAAAAAAAAAGAAAGAAAGAAAAAGAAGAAGAAGCAACAAAGAAAGCAATTAAGCACAAACAGATTTTTTGTCT
ATGTAGGAGAGGACAAGAGATATTTCACTCAAAGCCCATTGGTTTTCCCTGCGAACCTCTTCCTCTTCCTCCGGTGTGAAGTCATTCTTGATGTTGAATG
TCTTGCGTATCTCCTCAGGTGTTTTCCCCTTTATCATGTCCGCCACCGTCTGGCAAGGGCTGACCAGGATGAGATCGAAGAGGGTGGCTTGATCGACCTT
GACGAAGTCAGCGTCCCATGTCTTGAGATCGTCGTCGGCGGCGGAGGAGGCGCGGTCGTCGGACTTGGGAGCCTCGACGTGCTTCTTGCAGTACTCGATG
ACCTTGGAGAGGATCTTGCTCGTAACGTTCGGAAGGGGAATTCCGTTGTCGGCGCAGTCGTCCTCGATCA