CANTATAdb - search

Detailed information on CNT30112782

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30403855	Ficus carica	Beta vulgaris	10.1	23.08	89.29	84	forward
CNT3096971	Ficus carica	Solanum tuberosum	10.22	22.79	85.88	85	forward
CNT30589619	Ficus carica	Musa acuminata	12.5	40.62	87.5	104	forward
CNT30555334	Ficus carica	Oryza glaberrima	23.68	60.06	82.23	197	forward
CNT30171771	Ficus carica	Trifolium pratense	14.42	32.09	83.33	120	forward
CNT30650073	Ficus carica	Rosa chinensis	14.06	20.14	87.18	117	forward

Expression of CNT30112782

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MCLIVWDSRATASSTSKVSPSELFSVIFLPDAIASEISSAVTAMGRER*

>peptide 2 (58 aa)
MREKRNQGRGGEKGADQDEIEEGGLIDLDEVSVPCLEIVVGGGGGEFRCRRSRPRSCA*

Sequence

>CNT30112782
GGGGCATAATATAAACCACTATATTCATCAACATATATACATATATACACATGTATAATCATAGCTCCTGAAAACTCAATCGCATACCCATCATGACAAA
ACTGAATATGAACGCCATAGAATGATTAAATAACACATGCATATACAGGAACATATACATACATATATATATATATAGATGGAATTTCGTAGGAATGAAA
AAAAAAAACCCCTAAATTAACGAATTTTATTTATTTTGAAAACGAAACGGAAAATAACAATTTCTCCGAAAAATTCGTTGTCTATTAATCGAGCTATCGA
AATCAAAACTTATTTCAGGAAAAAAAAACTTTATCAATTGTCTATGCGTTTTTAAGATTATAAGACATGAAAAAAGCAAAGAGTACAGATGTAAGAATTA
GAAACCCTAGGAACAAAAATCAAACCAAACAGAAAGAAGGATGAGAGAAAAACGAAATCAAGGAAGAGGAGGAGAAAAAGGGGCTGACCAGGATGAGATC
GAAGAGGGTGGCTTGATCGACCTTGACGAAGTCAGCGTCCCATGTCTTGAGATCGTCGTCGGCGGCGGAGGAGGGGAATTCCGTTGTCGGCGCAGTCGTC
CTCGATCATGTGCTTAATCGTCTGGGATTCGAGAGCCACCGCCTCGTCGACCTCGAAAGTCTCGCCATCGGAGCTCTTCAGCGTTATCTTTCTGCCGGAC
GCCATAGCTTCTGAGATCTCTTCGGCTGTCACTGCGATGGGTAGAGAGCGATAGAGGATAGGGATTGAGAAAGAGGAGAGAGAAAGGAAAGACAAAGGAA
CCGATGGAGAAACCTAAAGGCACAGCTTTTTT