Detailed information on CNT30111719


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SSM4|CHM1B_ARATH, E-value = 2e-78

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673796Ficus caricaSetaria viridis11.7346.787.74106forward
CNT30513024Ficus caricaJuglans regia24.4529.6691.4221forward
CNT30371693Ficus caricaArabidopsis thaliana19.1431.8683.82173forward
CNT30306600Ficus caricaTriticum aestivum22.0162.7885.43199forward
CNT3085000Ficus caricaVigna radiata51.3316.5287.07464forward
CNT30554195Ficus caricaOryza glaberrima20.916.286.77189forward
CNT30254428Ficus caricaAvena sativa14.624.5888.64132forward
CNT30669382Ficus caricaTriticum dicoccoides17.8127.0187.58161forward
CNT3060118Ficus caricaArabidopsis lyrata20.4662.9384.86185forward
CNT30141866Ficus caricaLolium perenne24.4536.3587.33221forward
CNT30347540Ficus caricaEragrostis tef51.3339.2282.33464forward
CNT30368840Ficus caricaSorghum bicolor23.1258.2283.73209forward
CNT30370517Ficus caricaOryza glumipatula23.1241.8884.21209forward
CNT30571602Ficus caricaVitis vinifera24.1219.7688.07218forward
CNT30705067Ficus caricaPrunus avium37.0634.3686.57335forward
CNT30644153Ficus caricaCannabis sativa31.8641.1486.11288forward
CNT30116955Ficus caricaOryza nivara20.9123.9587.83189forward

Expression of CNT30111719

Peptides detected in this lncRNA

>peptide 1 (64 aa)
TNFQAQMRKSRDKDKVIVMRNKINKKKKKKKRGEKKKTKLNLIYTHRKIQFFEHQTSFRINSLM*

>peptide 2 (54 aa)
MALSMNSAWTSMLTNCFSNWSIVSDIFWRFPVAREDSRDLTMLPMDLLMVVILA*

>peptide 3 (51 aa)
MFPFSMAFLILSFSDFSSFSHLRDWRWRDFEVNFNSMIWFISFSVFPMAII*

Sequence

>CNT30111719
CACAAATTTCCAAGCCCAAATGAGAAAATCCAGAGATAAAGATAAAGTCATTGTTATGAGAAACAAAATTAACAAAAAAAAAAAAAAAAAAAAGAGGGGG
GAAAAAAAAAAAACCAAACTTAATTTAATTTACACGCATAGAAAGATCCAATTTTTCGAACATCAGACATCATTCCGAATCAATTCACTTATGTAATCAC
ATAATACAGCATATCGCATACGAAATTCCTCCTAGTAAGGCCATGATCAAGGATCAATATAGATCAAATTCCAGTAAAAATAATTTTTTTAACCTCTAGC
CTTGAGCTCGGCAAGGCTGTTGACCTCGCCCTCGGGAGTCGACAGCGAGGTGGACCCGGCCATGGCGCTCTCCATGAACTCCGCCTGGACCTCCATGTTG
ACGAACTGCTTCTCGAACTGGTCCATCGTCTCCGACATCTTCTGGAGGTTCCCGGTGGCGAGGGAAGACTCGAGGGACTTGACGATGTTGCCCATGGACT
TGTTGATGGTGGTCATCTTGGCCTGAGTGTCGAGCCGAGCCACGACGGCGTCGAGCCGCGACGCCAGACGGAGGTAGTTCATCTGCTCGGTGCGCTTACG
GATCGCGTTCTCGGCGTAGATTCGAGCGCCGTCGATGTTCCCTTTCTCCATGGCTTTCTTGATCTTGAGCTTCTCCGACTTCTCCTCCTTCTCGCACTTG
CGGGACTGGCGTTGGAGAGATTTCGAAGTGAATTTCAACTCCATGATCTGGTTCATCAGCTTCTCAGTGTTCCCCATGGCGATTATCTAAGAGGAATTCG
ATTTCCGATTCTAGGGTTTTGTTGTTGTTATTGTTGATCTTGATGAAGGAAGCGTGTCCAAGATCAGATTTTGAATGTCCGCCTTTTTTTTTGGTTTATT
GACT