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Detailed information on CNT30111302


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30597068Oryza longistaminataOryza meridionalis35.2863.78100236forward
CNT30103600Oryza longistaminataOryza rufipogon81.4672.9698.72545forward
CNT30577981Oryza longistaminataOryza barthii100.316.7698.21671forward

Expression of CNT30111302

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MTPMHSLGVCTKAICTRNYLYFLYNESIVFMFELKV*

>peptide 2 (47 aa)
MFAFISTCLHFSGCDVMLNLILESRALCSSIVLFAKIMTFKFVINYL*

>peptide 3 (50 aa)
ILHNTPIYCCYLIKIHPWINVPLALIGLETRLSFFPLVCAHYDKMLLLGY*

Sequence

>CNT30111302
TGATTTTGCATAATACTCCTATATATTGCTGCTACCTCATAAAAATACATCCATGGATCAATGTTCCTCTAGCACTGATAGGCCTAGAAACAAGGTTGTC
CTTTTTTCCCTTAGTGTGTGCGCACTATGATAAGATGTTACTATTAGGGTATTAGTATGTACCTGCAGGTCTGCAGGTTCTTTTGAATGTGATTTAATTA
GCTAATGTTTGCTTTCATTTCAACCTGTTTACATTTTTCAGGATGTGATGTGATGCTGAATCTAATATTGGAAAGTCGAGCCCTTTGTTCTTCAATTGTC
CTATTTGCAAAGATTATGACCTTTAAATTTGTCATCAATTATTTATGACACCAATGCATTCTCTTGGTGTATGCACCAAAGCAATTTGTACGCGGAATTA
CTTATATTTTTTATATAATGAAAGCATTGTGTTCATGTTTGAACTAAAAGTCTAACAAACTGAGGTTTTAGTAGGGGATGCTTTGCATTGATAATAAAGT
GCCCATTACTTTGTAGTTACATGGGATATTTGTTACATAGGATAGATTACTGACTCAACTCTGGTGTCATTGATATACACAGGAGAGTTAATATAGAATA
TATGATGTTACTAATATATTTATCAATTGATTGCTTTAGTACATGGACGTGTTTTAGTGTATGCAGGCG