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Detailed information on CNT30111027


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697110Oryza longistaminataOryza sativa82.6594.2798.07362reverse complement
CNT30138781Oryza longistaminataLolium perenne22.1516.4487.6397forward
CNT30103845Oryza longistaminataOryza rufipogon77.6376.2397.35340forward
CNT30578311Oryza longistaminataOryza barthii79.4577.6895.69348forward
CNT30118046Oryza longistaminataOryza nivara66.4474.4295.88291forward

Expression of CNT30111027

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MPLLCKLKFLSSKMNSTQVDDNSVASHWRHPICWHRSRT

>peptide 2 (32 aa)
MVFLFMAANANHYGKVYMQNVYKLFLSHNLYK*

Sequence

>CNT30111027
AGCTGGACATGAGACCGTAAACAAGTAACATACAGACAATGGTGTTCCTGTTTATGGCTGCCAACGCCAACCACTACGGCAAAGTGTACATGCAAAATGT
CTACAAGCTTTTTTTATCACACAACCTATACAAATAATGGTACCAGCCTTTGCAGCTCCCGCTCAACCTAACAACCATCCCTCATCCTATCCCATCGTAA
TATAATATATAGCAACCAGTAATTAACTCGACCTGGCTAGAGATTTCACTCGCCAAAATTGTCCTGGTACCAAAAGAATCAGTTTAAACAACCAATAATA
GCACATCTACAACTTGAAAGATGCCTCTTCTGTGTAAATTGAAATTCTTATCATCTAAAATGAACTCTACACAAGTGGATGATAACTCAGTAGCTTCCCA
TTGGAGGCATCCCATATGCTGGCATAGGTCCAGGACCC