Detailed information on CNT30110851


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004193, E-value = 3e-133

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552937Oryza longistaminataOryza glaberrima95.0441.5296.81345forward
CNT30101533Oryza longistaminataOryza rufipogon45.455.7100165forward
CNT30575554Oryza longistaminataOryza barthii45.4555.7495.15165forward
CNT30116327Oryza longistaminataOryza nivara45.4536.7595.15165forward
CNT30604299Oryza longistaminataOryza punctata59.57.2284.72216forward

Expression of CNT30110851

Peptides detected in this lncRNA

>peptide 1 (29 aa)
SVVHPKSKKPEWESSFSLSSPSSSCRPPG*

>peptide 2 (91 aa)
MMPSPPPNGSSSLPSFFRSRFTLACRSLCSDLTSFLAADLWERRPRHGSSGARPHRRQCAAAGSSRCSCRLEANPAELLRHQLRLTILSKKP

Sequence

>CNT30110851
CTCTGTAGTCCACCCTAAATCCAAGAAACCAGAGTGGGAGAGCTCCTTCTCGCTCTCCTCGCCATCATCTTCTTGCCGGCCGCCGGGATGATGCCATCTC
CGCCGCCCAACGGGTCATCGTCGTTGCCATCTTTCTTCCGTTCCCGATTCACCCTTGCATGCCGTAGCCTCTGCTCTGATCTCACCTCGTTTCTTGCAGC
CGATCTCTGGGAACGCCGACCTCGCCACGGTAGCTCTGGAGCGCGGCCACACCGTCGTCAATGCGCAGCCGCGGGTTCGAGCCGCTGTTCCTGTCGCCTC
GAGGCAAATCCGGCTGAGCTACTACGCCACCAGCTTCGCCTCACCATTCTCTCCAAAAAGCCC