« Back to Oryza longistaminata search


Detailed information on CNT30110813


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000940, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30595508Oryza longistaminataOryza meridionalis28.444.5394.92236forward
CNT30103763Oryza longistaminataOryza rufipogon54.9913.9596.28457forward
CNT30577454Oryza longistaminataOryza barthii98.4435.2194.87818reverse complement
CNT30115921Oryza longistaminataOryza nivara98.0735.8994.97815reverse complement

Expression of CNT30110813

Peptides detected in this lncRNA

>peptide 1 (64 aa)
KSFXXXXLFLAGECDLWFMKIYSICISIQIYLTAGLCIVLTSTKREFLFVVAYLSCQISGFYLL*

>peptide 2 (52 aa)
MYIFCFYLFTEHLFISLLVQRTVNTFPCAFVMIHGDSGRTGGGLRSYYQLLG*

>peptide 3 (44 aa)
MHIHPNISDSRTMHCANKYKKRVFICCCILIMSNIRFLFVVIAY*

>peptide 4 (38 aa)
MSNFLFFFHVIMRMEGDEYFTSLMNEDSTALSRELGVL*

>peptide 5 (32 aa)
MVIAGGPEEACAHIINYWDESEICFSSFKMII*

Sequence

>CNT30110813
ATAAGTCATTTGANNNNNNNNNNTTGTTTTTGGCTGGTGAATGTGATTTGTGGTTCATGAAAATATATAGCATATGCATATCCATCCAAATATATCTGAC
AGCAGGACTATGCATTGTGCTAACAAGTACAAAAAGAGAGTTTTTATTTGTTGTTGCATACTTATCATGTCAAATATCAGGTTTTTATTTGTTGTAATTG
CTTACTGATCATGTCAAACTTCTTGTTTTTTTTTCATGTAATAATGAGAATGGAAGGAGATGAGTATTTCACTAGCTTGATGAATGAAGACAGCACTGCC
CTGAGTCGGGAACTTGGGGTTCTCTGAATAGCCAGACAAAATTGCAGCCTTTGCTGATCGTCGAAAGTACTCTGTCAATGGTTGTCATGGCTGGGTAGCA
GCAATCTTGTATTATCTTAATACTAACTGGTTGCACTTGCAAATACCTTCAGAGATGAGCTAGCAAGCACTATCATGTAGCTGGTATATATGTATATTTT
CTGCTTTTATTTGTTTACAGAACACCTGTTTATTTCGCTATTAGTTCAAAGAACTGTTAACACATTTCCGTGCGCATTTGTAATGATCCATGGTGATAGC
GGGAGGACCGGAGGAGGCTTGCGCTCATATTATCAACTATTGGGATGAATCTGAGATATGTTTCTCAAGCTTCAAAATGATAATATAACGACATTAGTTA
AACTGGTCTTTAGCAATGTATGAATCTATTTGAAAGCTACATAATTCAGTTTTTTTTTTTTTTTGTATGGAGGGAGTTTTAGAATCCATTTCAGTGTGAT
AATTCTCTCTGGTACCTTTCTTTTATGCATA