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Detailed information on CNT30110739


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30115582Oryza longistaminataOryza nivara22.1416.4684.9593forward

Expression of CNT30110739

Peptides detected in this lncRNA

>peptide 1 (41 aa)
ACVCLSAAPMGDWGRRRWRRAGGRTGRRRRGWAAAPACATT*

>peptide 2 (48 aa)
RVCVSLRGAHGGLGEAEVAAGRRPHRAAEAGMGGSACLRDDLRCFRAR*

>peptide 3 (50 aa)
RVCVSPRRPWGIGGGGGGGGPAAAPGGGGGDGRQRLPARRPKMLPCTMIV*

>peptide 4 (51 aa)
MTRVLIIPSSEEVVKLSVRTREYTSNALMSGGSSELGVLRRVKPVLFLRKN*

Sequence

>CNT30110739
CGCGTGTGTGTGTCTCTCCGCGGCGCCCATGGGGGATTGGGGGAGGCGGAGGTGGCGGCGGGCCGGCGGCCGCACCGGGCGGCGGAGGCGGGGATGGGCG
GCAGCGCCTGCCTGCGCGACGACCTAAGATGCTTCCGTGCACGATGATCGTATGAACCTCCGGCATACATGACACGTGTACTGATCATACCATCGTCTGA
AGAAGTGGTGAAGTTGTCCGTACGAACAAGGGAGTACACCTCGAACGCGTTGATGAGCGGTGGGAGCTCTGAGCTGGGTGTCTTGCGCAGGGTGAAGCCT
GTGCTCTTCTTGCGCAAGAACTGACCCCTCTGGTGCATGCTGTTCACCACTAACAGGGGCGGTGTATAGTTGGCAAACAGCTTGGTATCATCGCTGTAGA
TATCAAACGTTCGGTTCGGG