Detailed information on CNT30110647


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696509Oryza longistaminataOryza sativa57.2251.0399.69321forward
CNT30555228Oryza longistaminataOryza glaberrima50.9842.3798.25286forward
CNT30103619Oryza longistaminataOryza rufipogon35.6548.3198.5200forward
CNT30577832Oryza longistaminataOryza barthii40.4637.5898.24227forward

Expression of CNT30110647

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MWSRKGCSGSGFGLGGSGFGSGLGGTGFLWKWSMIFFLMGP

>peptide 2 (60 aa)
MHDFDLKLLLCRQSDRGQDGMIKRPVRIIFISSLPEGSGCGTPAQAAAWALAWAQASALA*

Sequence

>CNT30110647
GGACTAGTTTGTCAGATAAAAATAACTTTTTCTTTAACCAATGCTAACCTCTTACGATCCAATGGCTTTGGCTGATACAGTGAATAGTCCGCCACAACAG
AACTGATTAAATATAAATAAATTATCTTACCATATATAACTGCATTTGATAGAGAAGAAATAGATACAAGTACAAATTAAAACTCCTGTCGATGAAAGCT
AATGCATGACTTCGATCTCAAACTGTTATTATGCAGACAATCTGACAGGGGGCAGGACGGCATGATCAAACGTCCAGTGCGGATCATATTCATCAGTTCT
TTGCCGGAGGGCTCGGGTTGTGGTACTCCGGCGCAGGCTGCGGCTTGGGCTCTGGCTTGGGCTCAGGCTTCGGCTCTGGCTTAGGCGGCACTGGCTTCTT
GTGGAAGTGGTCGAAGAAGTGCTTCTCCTTCTTGTGGATGTGGTCGAGGAAGGGGTGTTCCGGCTCAGGCTTCGGCTTGGGTGGCTCCGGCTTCGGCTCC
GGCTTGGGTGGCACCGGCTTCTTGTGGAAGTGGTCTATGATCTTCTTCTTGATGGGACCGC