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Detailed information on CNT30110484


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT001499, E-value = 1e-68

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30104235Oryza longistaminataOryza rufipogon17.525.5586.07280forward
CNT30578208Oryza longistaminataOryza barthii17.543.1486.43280forward

Expression of CNT30110484

Peptides detected in this lncRNA

>peptide 1 (61 aa)
LEPIALQEQKISIEIPRPFSITPIPHKVLPVLKVELPGRSPPRRLRSPPAAQRHHGSPQPD*

>peptide 2 (38 aa)
MKVQSLVITFTRCFIKWLLRYKMMFCSCELVKWLRRSF*

>peptide 3 (29 aa)
MVLSSTRSLCPSTLPRVAASVPRHHPDLR*

>peptide 4 (63 aa)
MFSQKFTGLVNGPVIDSQPLSLDTSPSCRLRASTPPRPPLTPSASASSAAIWTATTEEQVRYY*

Sequence

>CNT30110484
TTTGGAACCCATTGCCTTGCAGGAACAGAAGATATCCATTGAAATTCCGCGTCCCTTTTCTATAACTCCTATACCACACAAGGTCCTCCCTGTACTGAAG
GTTGAGTTGCCTGGTCGGTCTCCTCCACGCCGCCTCCGATCTCCACCAGCGGCTCAACGCCACCACGGATCTCCGCAGCCAGACTAGCATCTGCCTCCTC
CCGTTGCCGGTCGCCCAGGGCTCTGCTTCCGGTAGGTGGCGGCACTGCCGGTGGAGAGGTCGCTTGCACACCATCTGGATTGGCGCTGGCCTCACTAGGG
GGCGCGGCTGTTCCACAAGATCAATTCGACATCAGGAGCCTTATCTCTATCTCTTGACTCCAATCCAATCCCCATCTCTCTGAATTTTTTTTCTTTTTCT
TTTTTTGTGTGCAGAACAGAACGAGCGAGAAGGTCACAATTGTAGAGAGCATCTCCCAGATTGGTCGTATGGCGAGCAAATGGATAGATAGTATTGCCCT
ATCTAATAATTAATACATCTTTGTTCATTGCAAAATGCAAATTTTAGTCTTTCTGTTTCAATAATTAACCTTTTTTTTGCATATATCTTTCTTGATTTGA
TAACATACCATTTCCTGAATCTGTTTTGGACTTTGGCTTCCCTGCGAGCTTTAGTTTCAAATCCAATTAAATATATTGTCCTGTATATCCTTTTTCCCCT
GAAATAATGGGAAGTGTAGATCAATAATCAGTGCGTAAACTATTAAGTTCATTTATCTGCACACTTTGTTCTTGGAAGTCATAACTTTAAATTCACCTAA
GTCTGCATATCTTTGTNNNNNNNNNNACTACTTCCAATCAAGAGGATTGCCGTTTAGTTCCTTGCTACATCCAATCCAGAGATGGTGCCGGTGATGCTTG
CTGCTTCATGAGCTCTTGCTACGGGTGCAAGCAATGGTCTACTCTTCCTGCGGCATATAGGTGCTGGAGGCAAATTTTTTGGAGGCTCTGATATCAATGT
TTTCACAGAAGTTCACAGGACTAGTGAATGGTCCTGTCATCGACTCGCAGCCTCTGTCCCTCGACACTTCCCCGAGTTGCCGCCTCCGTGCCTCGACACC
ACCCCGACCTCCGCTGACTCCATCTGCATCTGCATCGTCAGCCGCAATCTGGACAGCGACGACAGAGGAACAGGTAAGGTACTACTAACTGGAACTGATT
TGTGAAGTGCAATGTGCACAATTTGGGGATTCATTCTGAGAACGATCGTACTAGACCATTGTTGACCAAAATTTGAAAATATAAGTTTTCTCTATGAAAG
TTCAATCGCTGGTTATAACATTTACAAGGTGTTTTATTAAGTGGCTGCTTCGTTATAAAATGATGTTTTGTTCATGTGAACTTGTGAAGTGGCTGAGAAG
GTCTTTTTAGCTTGAGTGCAGTAGTTGCTCTATCTTGTGAAGAGTAAAATGAAGTATTGGCAAGTGTGAGACAGGGGCTTATAGTTCCAGTGATATGAAA
TCATTCATCATGTTTGTTGCCTTGTCTTGATGCCTGGAATATGATATTTTTTCCAAGTAGCTTTGATGAAATGCAACAATGAGTCAATGACCAAATTTGT