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Detailed information on CNT30110391


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697255Oryza longistaminataOryza sativa53.9930.1291.63203forward
CNT30104287Oryza longistaminataOryza rufipogon53.9936.3891.63203forward

Expression of CNT30110391

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MPRLGDPDADLVLRVLCEITYVCCIHYIGVSSNWCDLLGGGIIMTWNATFLILDKINSIAQ

>peptide 2 (81 aa)
PQIRLNRKGIGIDFIRITTRSSIPSRDPRADSAGASLHPSIGSPPAANKLVHPQSQRCTLLLQGYASIGGPGCRSSAESSL*

Sequence

>CNT30110391
CCTCAAATTCGTTTAAACAGAAAAGGAATAGGGATTGATTTCATCCGAATCACGACGCGCTCGTCGATCCCCTCCCGCGATCCGCGAGCAGATAGCGCCG
GGGCTTCGCTGCATCCATCCATCGGATCCCCTCCCGCCGCCAACAAGCTAGTGCATCCCCAAAGCCAAAGGTGCACACTATTATTACAAGGATATGCCTC
GATTGGGGGACCCGGATGCAGATCTAGTGCTGAGAGTTCTTTGTGAGATTACATATGTGTGTTGCATCCACTATATTGGTGTGAGCTCAAACTGGTGTGA
TTTATTAGGAGGTGGTATTATAATGACATGGAATGCAACGTTTTTAATTCTAGACAAGATTAACTCGATCGCCCAA