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Detailed information on CNT30110205


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697711Oryza longistaminataOryza sativa27.9335.9995.21167forward
CNT30104763Oryza longistaminataOryza rufipogon27.7618.0295.18166forward
CNT30117976Oryza longistaminataOryza nivara27.9330.3695.81167forward

Expression of CNT30110205

Peptides detected in this lncRNA

>peptide 1 (33 aa)
EAAACNATARKTMLGAEIQFKPALSIHGQWCYL*

>peptide 2 (32 aa)
MKVALQYHINLFFKFIIIKTQINHTIIPSRFT*

>peptide 3 (69 aa)
KLQPAMLLQGRQCLEQKFNSSLRYQSMVNGAIFECDSVRIVNLDQLPQAQLLQNVLGGLKEALHQLQQT*

>peptide 4 (38 aa)
RSCSLQCYCKEDNAWSRNSIQACAINPWSMVLSLNVIV*

Sequence

>CNT30110205
AGAAGCTGCAGCCTGCAATGCTACTGCAAGGAAGACAATGCTTGGAGCAGAAATTCAATTCAAGCCTGCGCTATCAATCCATGGTCAATGGTGCTATCTT
TGAATGTGATAGTGTGAGAATTGTTAATTTGGATCAGCTGCCGCAAGCACAACTGCTACAGAATGTGTTGGGTGGTCTGAAAGAGGCATTGCATCAGCTG
CAGCAAACTTAGGTCCCGTTCATTTCTCCAACAAGAGTTGGATGAAGATAAAGATTTTCGTGGCACGCTTTTCAAATTGCTAAACGGTGTGTTTCATGCA
AAAACTTTCTATATGAAAGTTGCTCTACAATATCATATTAATTTATTTTTTAAGTTCATAATAATTAAAACTCAAATCAATCATACGATAATACCATCTC
GTTTTACGTAAAAAACTTAATCTTCATACGCAAAACTTAATCTTCATCTTCATCTTCTTAAAGTGACAAGTCAAGTTACTTGCAGCGAGTTGATATGTTT
TACCTAAAACCTTCACTGGATTAAAAAAGAACTTGATGGGGGTGCTGACTGTTTAACTTTTTCATATTAACAATGGTATGATGAAGCTTGAATCTTTG